Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00280 ATGGTAGCTGCTGTGTCCACGACGCTAAACCCCAAGACTGCCGCCGCTCAGAAAGGGCCTCATCTTCATCCGACGCGGCAGAATTCGAACAGAATTCCTCTATTTCCGTCCGACTCCGACAATGCAATTGATCCGCGCAAGCCGAAATCTCGCGAGGTCACTTCTCGATTTATGCCTCCATCGAACTCCTCTTCCTCGGCCTTGGTTACCAAACGGTCTCCTTCTCCTTCACTCGCTAGAACTCCCGGTTTAGCCGCTACCCCGACGCAGACTGGTTCTTCGGTCAATAAGCGTTCGCTATCGGTGGACCGAAGAAGAGTTGGGACTCCTAGGCCTTGTTCTCTTGATTTCAGGACTAGGAATGATAATGGTGGCGTGGCTGAGATGCCTGCTTCTCAGAAGCTCTTGCTTACTTCTACGAGAAGCTTATCTGTTTCATTCCAGGGCGAGTCCTTCTCTCTGCAAGTTAGTAAGGCGAAGCCGGTTCCTTCACCAGGTGTGAGGAAGGGTACGCCTGAACGCAGGAAGTCGACGACGCCAGCGAGAGGTGGCGTTGCGGACAAAGCAGACAACTCAAAGTTTATTGTAGATCAGCATAGATGGCCCGGGAGGTTGCGGCAGGCTAATTTGATGAGCAAGAGTTTGGATTGTGAGGACATTGCCGAAAGGATGAGGGTTAGTGGCAGATCTGTGAATGTCATTAGGCAGTTGCAGGGTCCTATGGCTCAGGGTAGGGCTTCCTTTGATGGGGTTTTGAGCTCGGATTCCGAAAATGGAGGATTAGAGAAGGCGGGTGAAGTTGTTGTGGACGCAAATTCAGAAAATGTATCTGATCAGTCTAATGTAGCTTCATCTGATTCTGATAGCGTCTCTTCCGGTACCAATTCTGGAGCTCAAGAGTACAGTACTGGCGAAGTACAGGGGCAGCGGGGACCTCGGGGGATTGTAGTACCGGCAAGATTTTGGCAGGAGACAAACAACCGGTTGCGGCGCCAGCCCGAAAATGGGTCGCCTTTGTCCAAAAATGTGGGGGTAAGAACTTTAGCTCCTTCCAAGCTTACCGTGCCAAAGAAGTTTGCGATGGATAGTCCTACATCATCTCCACGCGAAGTTGCCAACAGTCGAGGTCAATTGTCTCCCATTCGCGGTTCACCTAAGCCTATGTCACCAAGTAAGCTGTTAGCATCGTCCACCGGACCTCGGTTGAGGAATGCTGTGGGAAGTACACCTCTTAATAGTTTGAGCAGCATTCCATTATCAATGACAAGTTTTGTTGCCGATGCTCGGAGGGGGAAGATTGCGGAGAACCGAATTGTAGATGCACATTCTTTGAGGCTCTTACATAATCGGCTGTTACAATGGCGTTTTGTCAATGCCCGAGCAGATGCAGCCCATTGCGGCCTCAGGTTGAATGCAGAGAGAAGCCTCTATAACGCCTGGCTGAGTACCACGAAGCTTCGTGAATCTGTTAGAACAAAGAGATCGGAGTTACAGTTACTGAAACAAAAACTAACGTTAACGTCCATCCTCAGTTGGCAAATGTCGCATTTGGAGGAGTGGGATGAACTGGATCAAGACTTTTCCAACAGCTTATCAGGTGTTACTGAAGCTTTGAGGGCTAGCACCCTTCGCCTGCCAGTTGTTGGGGCAGCAAAGGCGGATGTCCAAGATATTAAGGACGCAATTTCTTCTGCCGTTGATGTCCTGCAGACAATGGCATCATCAATTTGCTTTCTATTATCAAAGGTTGGTAAAGTAAACTCTCTTGTTTTTGAGTTGGCGAATGTGAGTGCAAAGGAATGTACTTTGCTTGAGCGGGTAAAATGTCTATTGTCTGCAATTTCTGTACTCCAGGTGAAAGAGTGTAGTCTGCGAACGCAAATTTTACAGCGGAGATACGCACCTTGGACCTGA 1914 49.37 MVAAVSTTLNPKTAAAQKGPHLHPTRQNSNRIPLFPSDSDNAIDPRKPKSREVTSRFMPPSNSSSSALVTKRSPSPSLARTPGLAATPTQTGSSVNKRSLSVDRRRVGTPRPCSLDFRTRNDNGGVAEMPASQKLLLTSTRSLSVSFQGESFSLQVSKAKPVPSPGVRKGTPERRKSTTPARGGVADKADNSKFIVDQHRWPGRLRQANLMSKSLDCEDIAERMRVSGRSVNVIRQLQGPMAQGRASFDGVLSSDSENGGLEKAGEVVVDANSENVSDQSNVASSDSDSVSSGTNSGAQEYSTGEVQGQRGPRGIVVPARFWQETNNRLRRQPENGSPLSKNVGVRTLAPSKLTVPKKFAMDSPTSSPREVANSRGQLSPIRGSPKPMSPSKLLASSTGPRLRNAVGSTPLNSLSSIPLSMTSFVADARRGKIAENRIVDAHSLRLLHNRLLQWRFVNARADAAHCGLRLNAERSLYNAWLSTTKLRESVRTKRSELQLLKQKLTLTSILSWQMSHLEEWDELDQDFSNSLSGVTEALRASTLRLPVVGAAKADVQDIKDAISSAVDVLQTMASSICFLLSKVGKVNSLVFELANVSAKECTLLERVKCLLSAISVLQVKECSLRTQILQRRYAPWT 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1147853 1152839 + CmaCh09G002800.1 Cma09g00280 300285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00280 637 PANTHER AUGMIN FAMILY MEMBER 1 635 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 1 126 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 366 380 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 55 98 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 156 190 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 272 306 - -
Cma09g00280 637 PANTHER QWRF MOTIF-CONTAINING PROTEIN 9 1 635 - -
Cma09g00280 637 Pfam QWRF family 289 605 IPR007573 -
Cma09g00280 637 MobiDBLite consensus disorder prediction 240 259 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 390 408 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 272 315 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 354 408 - -
Cma09g00280 637 MobiDBLite consensus disorder prediction 22 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00280 - - - csv:101208707 1020.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00148 Cma09g00280 CCT
Cma09g00280 Cma12g00592 CCT
Cma05g00148 Cma09g00280 ECH
Cma09g00280 Cma12g00592 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00280 Cma-Chr9:1147853 Cma12g00849 Cma-Chr12:6296721 1.51E-68 dispersed
Cma11g01704 Cma-Chr11:11275218 Cma09g00280 Cma-Chr9:1147853 3.70E-165 wgd
Cma12g00592 Cma-Chr12:3090529 Cma09g00280 Cma-Chr9:1147853 0 wgd
Cma19g00558 Cma-Chr19:6351182 Cma09g00280 Cma-Chr9:1147853 8.70E-166 wgd
Cma05g00148 Cma-Chr5:651683 Cma09g00280 Cma-Chr9:1147853 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g663 . . . . . . . . Cmo05g00149 Cmo12g00532 . Cma09g00280 . Car12g00536 Sed05g2623 Cpe06g00192 Cpe07g00513 Bhi04g00407 Tan02g1017 Cmetu01g0451 . Hepe08g1326 . Lcy13g2128 Cla08g01614 Cam08g2116 Cec08g1701 Cco08g1824 Clacu08g1801 . Cre08g1583 . . Cone17ag0882 Cone20ag0228 Lsi04g01495 Csa04g02466 . Cme03g02095 Blo17g00863 . . . . Bpe05g00386 . Bma05g00054 . . Cmo09g00274 Cma12g00592 Cma05g00148 Car05g00128 Car09g00236 Cpe11g00126 . Bhi09g03240 . . . Hepe01g1820 Mch11g0354 . Cla05g02098 Cam05g2251 Cec05g2270 Cco05g2312 Clacu05g2247 Cmu05g2110 Cre05g2233 Lsi08g01518 Csa02g01902 Chy07g00180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012087 0 2 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00280 Cma_Chr09 FPKM 2.247674 2.290869 3.938173 4.402867 11.14057 10.563059 11.491298 2.158043 2.19179 2.759904