Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00281 ATGAGTTGCAGCGGCTGCAGAGTGCTTCGAAAGGGCTGCAACGAAGCTTGCGTTCTAAGGTCCAGTCTCCACTGGATTCATTCGCCGGAAGCCCAAGCCAACGCCACCTTGTTTCTCGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCGCCGCCGTCCCCCATCATCAAAGACCGGCTCTGTTTCAGTCTCTGTTATTCGAGGCTTGCGGCCGCACCGTCAACCCAGTTAGCGGCGCCGTTGGTCTCTTCTCCAGCGGGAACTGGCACGTCTGTCAGCTGGCGGCGGACACCGTTCTCAGCGGCGGAGTTCTCCGCCCCATACCCGGAATCGAACTTTCGGGAAATCCCACGCGCAACCTCGATGATTCCTCCCTTACTTTCAATACCGATGTCTGGACCACCACCGCACAAAATCTTCAACTCTACCCATCCAGTCCGTCGGATTTCCGGTGTCTCCCTGATCTCGCCGTCGCCGCCAGAACAGCGAAGAATCGGCGGTCTCTAGATTCCGAAGACTCGATCATGACCAGCTTCGGAAGCGGTGACCGGCGGAAACAGAGGAAGCTTTTAAATTTATTCATCTGA 594 55.89 MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLFSSGNWHVCQLAADTVLSGGVLRPIPGIELSGNPTRNLDDSSLTFNTDVWTTTAQNLQLYPSSPSDFRCLPDLAVAARTAKNRRSLDSEDSIMTSFGSGDRRKQRKLLNLFI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1154490 1155679 - CmaCh09G002810.1 Cma09g00281 300286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00281 197 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cma09g00281 197 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cma09g00281 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 197 - -
Cma09g00281 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01793 Cma09g00281 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00281 Cma-Chr9:1154490 Cma14g00811 Cma-Chr14:4107612 5.05E-47 dispersed
Cma01g01793 Cma-Chr1:11993723 Cma09g00281 Cma-Chr9:1154490 7.56E-107 wgd
Cma03g00932 Cma-Chr3:6676809 Cma09g00281 Cma-Chr9:1154490 7.78E-61 wgd
Cma07g00659 Cma-Chr7:2878344 Cma09g00281 Cma-Chr9:1154490 4.60E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35594 PF03195 LOB 3.70E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00281 - - csv:101208953 334.339