Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00282 ATGGCTCTTGAAGCTCTGAATTCTCCCACCACGCCATCACCGGCTCTCCACTATGATGACCCTAGCCCCAATTCGATTGAGTCTTGGTCTAAGCGGAAGAGGACCAAGCGTCCACGGGGATTTGATAACCCTCCCACCGAGGAAGAGTATTTAGCGCTATGTCTCATCATGCTGGCTCGCGGTGGCGCAACCCCTACTGCCGACCCTGACCACCGACTTGAGTATGAAGTTCCCATTCCGGCTCAACCCATATCGGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGCAATAAGGCGTTTTCGTCTTATCAGGCGTTGGGTGGACATAAAGCCAGCCATAGAAAATCAGCTACAGGGGAAGACCACTCCACTTCCTCTACTACTACTACTACCACTACTTCCGCCACCGCCACCGCCTCCGTCGGTGGGGGTAAATCCCACGAGTGCTCTATTTGTCACAAGTCTTTTCCGACTGGCCAGGCCTTGGGCGGCCACAAGCGTTGCCACTACGATGGTGGAATCAACAACACCACCACCAACAACAACAACAACGCCACTGTGACATCGTCGGAAGGAGTTGGGTCCACCCACACAAAAAGCCACAGCCAGCGCGACTTTGACCTTAACCTCCCGGCTTTGCCAGAACTATCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCTCGTGTATTGACGATTCCCAAAATCGAAATTTCTCAAAATTAA 756 52.38 MALEALNSPTTPSPALHYDDPSPNSIESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATPTADPDHRLEYEVPIPAQPISVVKLSYKCSVCNKAFSSYQALGGHKASHRKSATGEDHSTSSTTTTTTTSATATASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGINNTTTNNNNNATVTSSEGVGSTHTKSHSQRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRVLTIPKIEISQN 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1160306 1161061 - CmaCh09G002820.1 Cma09g00282 300287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00282 251 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Cma09g00282 251 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Cma09g00282 251 Pfam C2H2-type zinc finger 91 115 - -
Cma09g00282 251 Pfam C2H2-type zinc finger 147 171 - -
Cma09g00282 251 MobiDBLite consensus disorder prediction 176 197 - -
Cma09g00282 251 MobiDBLite consensus disorder prediction 176 202 - -
Cma09g00282 251 MobiDBLite consensus disorder prediction 121 143 - -
Cma09g00282 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Cma09g00282 251 SMART c2h2final6 147 169 IPR013087 -
Cma09g00282 251 SMART c2h2final6 91 113 IPR013087 -
Cma09g00282 251 MobiDBLite consensus disorder prediction 1 18 - -
Cma09g00282 251 MobiDBLite consensus disorder prediction 113 145 - -
Cma09g00282 251 SUPERFAMILY beta-beta-alpha zinc fingers 91 169 IPR036236 -
Cma09g00282 251 PANTHER ZINC FINGER PROTEIN ZAT10 1 243 - -
Cma09g00282 251 Gene3D Classic Zinc Finger 89 169 - -
Cma09g00282 251 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 243 IPR044653 GO:0003700
Cma09g00282 251 MobiDBLite consensus disorder prediction 1 44 - -
Cma09g00282 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00282 Cma-Chr9:1160306 Cma02g01375 Cma-Chr2:8014199 8.25E-22 dispersed
Cma01g01792 Cma-Chr1:11987981 Cma09g00282 Cma-Chr9:1160306 1.40E-146 wgd
Cma11g01703 Cma-Chr11:11269468 Cma09g00282 Cma-Chr9:1160306 7.42E-47 wgd
Cma12g00593 Cma-Chr12:3095081 Cma09g00282 Cma-Chr9:1160306 4.61E-79 wgd
Cma19g00557 Cma-Chr19:6348134 Cma09g00282 Cma-Chr9:1160306 6.32E-43 wgd
Cma05g00147 Cma-Chr5:650418 Cma09g00282 Cma-Chr9:1160306 3.92E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35595 PF13912 zf-C2H2_6 1.50E-12 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00282 - - csv:101221218 426.402