Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00282 | ATGGCTCTTGAAGCTCTGAATTCTCCCACCACGCCATCACCGGCTCTCCACTATGATGACCCTAGCCCCAATTCGATTGAGTCTTGGTCTAAGCGGAAGAGGACCAAGCGTCCACGGGGATTTGATAACCCTCCCACCGAGGAAGAGTATTTAGCGCTATGTCTCATCATGCTGGCTCGCGGTGGCGCAACCCCTACTGCCGACCCTGACCACCGACTTGAGTATGAAGTTCCCATTCCGGCTCAACCCATATCGGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGCAATAAGGCGTTTTCGTCTTATCAGGCGTTGGGTGGACATAAAGCCAGCCATAGAAAATCAGCTACAGGGGAAGACCACTCCACTTCCTCTACTACTACTACTACCACTACTTCCGCCACCGCCACCGCCTCCGTCGGTGGGGGTAAATCCCACGAGTGCTCTATTTGTCACAAGTCTTTTCCGACTGGCCAGGCCTTGGGCGGCCACAAGCGTTGCCACTACGATGGTGGAATCAACAACACCACCACCAACAACAACAACAACGCCACTGTGACATCGTCGGAAGGAGTTGGGTCCACCCACACAAAAAGCCACAGCCAGCGCGACTTTGACCTTAACCTCCCGGCTTTGCCAGAACTATCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCTCGTGTATTGACGATTCCCAAAATCGAAATTTCTCAAAATTAA | 756 | 52.38 | MALEALNSPTTPSPALHYDDPSPNSIESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATPTADPDHRLEYEVPIPAQPISVVKLSYKCSVCNKAFSSYQALGGHKASHRKSATGEDHSTSSTTTTTTTSATATASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGINNTTTNNNNNATVTSSEGVGSTHTKSHSQRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRVLTIPKIEISQN | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1160306 | 1161061 | - | CmaCh09G002820.1 | Cma09g00282 | 300287 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00282 | 251 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 93 | 113 | IPR013087 | - | |
Cma09g00282 | 251 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 149 | 169 | IPR013087 | - | |
Cma09g00282 | 251 | Pfam | C2H2-type zinc finger | 91 | 115 | - | - | |
Cma09g00282 | 251 | Pfam | C2H2-type zinc finger | 147 | 171 | - | - | |
Cma09g00282 | 251 | MobiDBLite | consensus disorder prediction | 176 | 197 | - | - | |
Cma09g00282 | 251 | MobiDBLite | consensus disorder prediction | 176 | 202 | - | - | |
Cma09g00282 | 251 | MobiDBLite | consensus disorder prediction | 121 | 143 | - | - | |
Cma09g00282 | 251 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 91 | 118 | IPR013087 | - | |
Cma09g00282 | 251 | SMART | c2h2final6 | 147 | 169 | IPR013087 | - | |
Cma09g00282 | 251 | SMART | c2h2final6 | 91 | 113 | IPR013087 | - | |
Cma09g00282 | 251 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cma09g00282 | 251 | MobiDBLite | consensus disorder prediction | 113 | 145 | - | - | |
Cma09g00282 | 251 | SUPERFAMILY | beta-beta-alpha zinc fingers | 91 | 169 | IPR036236 | - | |
Cma09g00282 | 251 | PANTHER | ZINC FINGER PROTEIN ZAT10 | 1 | 243 | - | - | |
Cma09g00282 | 251 | Gene3D | Classic Zinc Finger | 89 | 169 | - | - | |
Cma09g00282 | 251 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 1 | 243 | IPR044653 | GO:0003700 | |
Cma09g00282 | 251 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cma09g00282 | 251 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 147 | 169 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00282 | Cma-Chr9:1160306 | Cma02g01375 | Cma-Chr2:8014199 | 8.25E-22 | dispersed | |
Cma01g01792 | Cma-Chr1:11987981 | Cma09g00282 | Cma-Chr9:1160306 | 1.40E-146 | wgd | |
Cma11g01703 | Cma-Chr11:11269468 | Cma09g00282 | Cma-Chr9:1160306 | 7.42E-47 | wgd | |
Cma12g00593 | Cma-Chr12:3095081 | Cma09g00282 | Cma-Chr9:1160306 | 4.61E-79 | wgd | |
Cma19g00557 | Cma-Chr19:6348134 | Cma09g00282 | Cma-Chr9:1160306 | 6.32E-43 | wgd | |
Cma05g00147 | Cma-Chr5:650418 | Cma09g00282 | Cma-Chr9:1160306 | 3.92E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35595 | PF13912 | zf-C2H2_6 | 1.50E-12 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00282 | - | - | csv:101221218 | 426.402 |