Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00287 ATGGGAAGACGTAAAACTCAGCGAAAAAATTCTCCAGCGGTGGATAGTGATGATGATATTAGTGTGAGTTCTTCATCGACTACGCGGTCTGATCGTATGTCTGTTGTAGGGATTGAGGATTTTCAATTTGACCAAGATACTATACTTGATCAAGCTCTTGATGCTTTATATGAGAAGAGGGGTTCCACAAGAGAGAAAGCGCTGGCATCAATCATAGAAAATCTCAACAACAATTTGCAACATCAATTTGTGGAAAAAAAATTTGCTACTCTGCTTCATCAATGTCTGAATTCTATCAAAAAGGGTTCCAGCAAGGAAATATCCTTGGCTTCTCGTGCAATTGGATTATTAGCTTTAACAGTGGGTGAGGGTGACAATGCTCGGGAAATATTGTCAGAATCAATTCCTTCAATTTCTCATGCTCTTAGATCTGGATCGGAGTCCTCAAAGATATCGCTGCTCGAATGCTTGGCGGTTATCACTTTTGTTGGAGGAAATGACATGGAGGAAATCGAACCGTTGTTGCAGCTCATGTGGCAAGTTGTCATTCCCAAACTAGGACAAAATGTAGTTGCAGCCAGGCAATCGGTAGCTATCATAACAGCTATGGTGTCTGCATGGTCCTTTGTCCTTACAACTATGGACGGGTTGAAACTTAATTCCAAAGATTGGCAAGAATCAATATCATATTTATCAAGTCTTCTGGACAAGGATGACCGTTCTGTACGCATTGCTGCTGGTGAAGCTCTGGCGTTGCTTTTTGAGATAGGCAGATTGGAGAAGTTTTCTGCTGAAGCTAGAGGATCAACTGATGGCTCCGCCCTGGAGGGAAGTAAACAGCGGGACTGGTTTATACATATACAGGGACTGAAGGGAAAAATTTTGAATCAAGTGAAAGGCCTCTTGATGGAAGCCGGTGGTAAGGGTTCTGCTAAGAGAGATCTCAACTCCCAGCGGAATACATTTCGAGATATCTTGGTGTTTTTTGAGGATGGTTATTGTCCTGAAACTTCGATTAAGATTGGAGGAGATCTGTTGCAGACTTCAACATGGACTCAACTGATTCAGCTGAACTTCTTAAAGCACATTCTTGGAGGAGGGTTTGTTAAGCACATGCAGGAGAATATATTCCTTCATGATGTCTTTGGGTTCACTCCGAAGAAAAAATTTCTCTTGGACAGCGAGCATCGAATATCGACCACGGAAAAGAGGATGTTCAAGTCACCAAATTCAATTGCCAATAAGACAAGGACTCAGTTATTGAACAAGCAGCGAAAGTTAGCTGAGAAACATTGGACACTATGCTTTAAACGTGGGCGACTGAGAATTATAGTATTTATTTATTGCGACGACTTAGAAGGTACTGTTGAAGGCTGGTGCGAGCCTCCATGTTTCTGTTGGACGAATTGTAAAAATAGTAGAAAACATAAATTACTCGCACTAAATATTCATAGCTACAAAATTAAAATTCTCACACGGCTCAGAAAGTTTGACCCTATAGAAGTACATACTAGTGCATGTGATCATCGACTTCCTGTGGAGGCTAGAATGCCCTCAATCTCCTATCTTGAACTTCTCTTTCCATGTTTACCTTTAATGCGCTGCTAG 1608 41.36 MGRRKTQRKNSPAVDSDDDISVSSSSTTRSDRMSVVGIEDFQFDQDTILDQALDALYEKRGSTREKALASIIENLNNNLQHQFVEKKFATLLHQCLNSIKKGSSKEISLASRAIGLLALTVGEGDNAREILSESIPSISHALRSGSESSKISLLECLAVITFVGGNDMEEIEPLLQLMWQVVIPKLGQNVVAARQSVAIITAMVSAWSFVLTTMDGLKLNSKDWQESISYLSSLLDKDDRSVRIAAGEALALLFEIGRLEKFSAEARGSTDGSALEGSKQRDWFIHIQGLKGKILNQVKGLLMEAGGKGSAKRDLNSQRNTFRDILVFFEDGYCPETSIKIGGDLLQTSTWTQLIQLNFLKHILGGGFVKHMQENIFLHDVFGFTPKKKFLLDSEHRISTTEKRMFKSPNSIANKTRTQLLNKQRKLAEKHWTLCFKRGRLRIIVFIYCDDLEGTVEGWCEPPCFCWTNCKNSRKHKLLALNIHSYKIKILTRLRKFDPIEVHTSACDHRLPVEARMPSISYLELLFPCLPLMRC 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1179858 1185200 - CmaCh09G002870.1 Cma09g00287 300292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00287 535 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 2-LIKE ISOFORM X1 1 430 - -
Cma09g00287 535 Pfam Interferon-related protein conserved region 375 426 IPR006921 -
Cma09g00287 535 Pfam Interferon-related developmental regulator (IFRD) 23 330 IPR007701 -
Cma09g00287 535 MobiDBLite consensus disorder prediction 1 26 - -
Cma09g00287 535 Gene3D - 45 267 IPR011989 -
Cma09g00287 535 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1 430 IPR039777 -
Cma09g00287 535 SUPERFAMILY ARM repeat 41 260 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00287 - - - csv:101221922 718.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01789 Cma09g00287 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01789 Cma-Chr1:11963359 Cma09g00287 Cma-Chr9:1179858 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g656 . Blo12g00985 . Bda03g00184 . Bpe04g00159 Bma04g00145 . . . Cma01g01789 Cma09g00287 Car01g01396 . . Cpe06g00197 . . . . . . . . . . . . . . . . . Cone17ag0884 Cone20ag0231 Lsi04g01490 Csa04g02475 . . . . . . . . . . Sed13g1800 Cmo01g01846 Cmo09g00278 . . . Car09g00241 . Cpe02g00218 Bhi09g03231 Tan01g4697 Cmetu07g1236 . Hepe01g1826 Mch11g0360 . Cla05g02104 Cam05g2256 Cec05g2276 Cco05g2317 Clacu05g2252 Cmu05g2115 Cre05g2239 . . Chy07g00187 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007704 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00287 Cma_Chr09 FPKM 14.646699 15.51793 20.443371 20.024559 14.766166 12.154756 14.242308 16.178135 14.950014 14.34091