Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00301 ATGCCGATGTACCAGCCGGAGCTGGGTGTGGGTGGTGGTGGGCAAGTTCTTGATGTAGAAACCGCCGTGAAAGATGGTATTCTCGGCGGCGGTGGGTTCATCTGCGAGGGTGGAACGGCGGAGAAATTGGATCTGAAGGAGATGGTGGAGGAGCTTGAGAACATAGAGGTTCCTTCGGTTTTTATCTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTAACGCTTTGTACAGGACAGACCTACGAACGTTCCAACATCATGAAATGGTTTTCTCTCGGCCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATTACTCCCAATAACACTCTTCACCAACTCATTAACAGCTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCAGAGGATGTGCAGGGGAGGGCTCTCGAGCTCTTAGACACATTGAAAAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTTCGCCATGTCGTGGCTTTGAATTCTTCGACCAAGAACACCGTGGAAGACAATGGCGGTCTTGCTTTGATTTCTTCTCTCTTGGGTCCTTTCACATCCCACGCGGTTGGATCCGAAGCCATTGGGATTTTAGTGAACTTGGATCTCGATGCCGAGTCAAGGAGAAACCTCGTCCAACCCGCCAAGATTTCGTTAATAGTGGACATGTTAAACGAGGGATCCACAGACACCAAAATCAACTGCACCAGATTGATTCAAACGCTCCTCGATGGGGACGATTGTGGAGCGGACACTGTCTCAGGTCTAAGCCTCGTGGTTGGATTGTTAAGATTAATCAAAGAAAAACAACACCCAAATGGCGTTCTTGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACAAGTCAAGAATTCTGTAGTGAGCATTGGGGCAATCCCACAGTTGGTTGAAATTCTACCAAATTTCAGCCCCGAATCTTTGGAGCTAGCCCTTCACGTATTGGATTCAGTTTCATCCCTCTCAGACGGCAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAATTTGGTGAAGTTGTTAATGAGAGTGTCGGAGAGCTGCACTCAGCTGGCGTTATCAATCTTATGGGCGGTCTGTAAACTCGCCCCTGAAGAATGTGCATCGCAAGCTGTGGAAGCAGGCTTAGCCGCCAAACTTCTTCTGGTGATTCAGAGCGGTTGCAATCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTGAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGAACAATACAATAA 1326 48.27 MPMYQPELGVGGGGQVLDVETAVKDGILGGGGFICEGGTAEKLDLKEMVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNIMKWFSLGHITCPTTMQELWDDSITPNNTLHQLINSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRHVVALNSSTKNTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLIVDMLNEGSTDTKINCTRLIQTLLDGDDCGADTVSGLSLVVGLLRLIKEKQHPNGVLAGLRLLKALCSQEQVKNSVVSIGAIPQLVEILPNFSPESLELALHVLDSVSSLSDGRVALKDCPKTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1239658 1240983 + CmaCh09G003010.1 Cma09g00301 300306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00301 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 137 IPR013083 -
Cma09g00301 441 SUPERFAMILY RING/U-box 51 127 - -
Cma09g00301 441 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Cma09g00301 441 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Cma09g00301 441 CDD RING-Ubox_PUB 61 103 IPR045210 -
Cma09g00301 441 PANTHER WDSAM1 PROTEIN 30 440 IPR045185 GO:0061630
Cma09g00301 441 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 30 440 - -
Cma09g00301 441 Gene3D - 138 263 IPR011989 -
Cma09g00301 441 Gene3D - 264 435 IPR011989 -
Cma09g00301 441 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Cma09g00301 441 SUPERFAMILY ARM repeat 131 424 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00301 Cma12g00605 CCT
Cma05g00129 Cma09g00301 CCT
Cma01g01775 Cma09g00301 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00301 Cma-Chr9:1239658 Cma04g00081 Cma-Chr4:403222 2.36E-35 dispersed
Cma01g01775 Cma-Chr1:11908140 Cma09g00301 Cma-Chr9:1239658 0 wgd
Cma12g00605 Cma-Chr12:3181039 Cma09g00301 Cma-Chr9:1239658 0 wgd
Cma05g00129 Cma-Chr5:572674 Cma09g00301 Cma-Chr9:1239658 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00301 - - csv:101223113 739.569