Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00302 ATGTCGTGGTTGGCTCGCTCCATTGCCAACACCCTTCGGCTTGATGACGAAGATGACGAAGATGACGAAGATGACGAAGATGACGAAGATGACGAACACAACGCTGTCGTTTCGCCCATTCACTCTGATCCTCCATCTCCTTCTCCGTTTACCATTCCACGCAACCAGATGGAGTCCCAATCCGAACTCGACGACGAAGCATTATCTCGCCGCGTCAGAGGGGACTTGACTGAATTCAAACAAACCCTAACCCGCCAATTTTGGGGCGTCGCCTCTTTCCTTGCTCTGCCGCCGCCTTCTCATCCCCGGCTGGATGGGGATCTCGCTGCCTCTTCCGATTGGAAGCCGTTCGAGGCGTTTAATCAGTCTGATCCGTCGATCTCCAAGGACGAAGTGGATCCGTCCGATCCGATTGAGGTCTTGAAGATGCGTTCGAACCATGAAGCGTATGCGAAATCCGGGGATTCACAGGGGGAATGCTACGAGGTGGATTGGGGAGATGTTGTTGGGATCACTGATGAAGTGCTGACGTTTGCTACGAACATTGCAATGCACCCTGAGACTTGGATTGATTTCCCAATTGACGAGGAGGAGGACGACGATGATTTTGAAATGTCTGATGCCCAAAAAGAGCATGCTTTCACTATTGAACGTCTTGCTCCTAGATTAGCTGCTCTCAGAATTGAGCTCTGTCCTTGCCATATGAGTGAGAGCTACTTTTGGAAGGTCTATTTTGTGCTCTTGCATTCAAGACTCAATAAGCAGGATGCGGAGGTTTTATCTACTCCACAGGTAGCAGAAGCAAGATCAATGTGGATGCAGGAATTACAAAAGCAGACCAAGCCAGAGTCTTACTGGTGTGGAAGAGACACTTTTGAGTTAAAAGACAGCTGTGATATGCTGCAGGAAGACGGTAGTCCCATGGCATTCCATGATAATCATTCTGGATTGAGGCAGCCGTGGTCATTTACGTCTGAGCCAAGCAATTATGAGACTGAGAAATATCAAATAGAGAGTTCTGGGACGCAATTCATCGATAAGTCTGTTATTGTTGAAAAACCTATAAGTAAGAACGAGGATAGAAACTCCACGATTGGGCCTTCTTCAAAATTCTTTGTTCAGAACTACGAGGATGAGTCAGACAACGACTGGCTAGAGGAAGACTCTGAGTTGGGTGGTTGTAATAAGACCATCCTCCCTCTTGAGAACGAAGAAGATATTTCTTTCAGTGATCTCGAGGATGATGATATGGTTCTGCCAGCTAAATTCAAGACTGCTTCCAAATAA 1287 47.24 MSWLARSIANTLRLDDEDDEDDEDDEDDEDDEHNAVVSPIHSDPPSPSPFTIPRNQMESQSELDDEALSRRVRGDLTEFKQTLTRQFWGVASFLALPPPSHPRLDGDLAASSDWKPFEAFNQSDPSISKDEVDPSDPIEVLKMRSNHEAYAKSGDSQGECYEVDWGDVVGITDEVLTFATNIAMHPETWIDFPIDEEEDDDDFEMSDAQKEHAFTIERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKQDAEVLSTPQVAEARSMWMQELQKQTKPESYWCGRDTFELKDSCDMLQEDGSPMAFHDNHSGLRQPWSFTSEPSNYETEKYQIESSGTQFIDKSVIVEKPISKNEDRNSTIGPSSKFFVQNYEDESDNDWLEEDSELGGCNKTILPLENEEDISFSDLEDDDMVLPAKFKTASK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1243301 1247239 + CmaCh09G003020.1 Cma09g00302 300307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00302 428 Gene3D BSD domain 170 263 IPR035925 -
Cma09g00302 428 MobiDBLite consensus disorder prediction 1 68 - -
Cma09g00302 428 Pfam BSD domain 199 256 IPR005607 -
Cma09g00302 428 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 428 - -
Cma09g00302 428 ProSiteProfiles BSD domain profile. 200 252 IPR005607 -
Cma09g00302 428 SMART wurzfinal6 200 252 IPR005607 -
Cma09g00302 428 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 428 - -
Cma09g00302 428 MobiDBLite consensus disorder prediction 14 33 - -
Cma09g00302 428 SUPERFAMILY BSD domain-like 170 257 IPR035925 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00302 - - - csv:101202841 670.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00302 Cma-Chr9:1243301 Cma11g00520 Cma-Chr11:2490459 1.15E-26 dispersed
Cma01g01773 Cma-Chr1:11897853 Cma09g00302 Cma-Chr9:1243301 0 wgd
Cma03g00900 Cma-Chr3:6574795 Cma09g00302 Cma-Chr9:1243301 9.01E-78 wgd
Cma07g00638 Cma-Chr7:2769769 Cma09g00302 Cma-Chr9:1243301 3.85E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g621 . Blo12g00993 . Bda03g00165 . Bpe04g00149 . . . . . Cma09g00302 Car01g01384 . . Cpe06g00212 . . . . . . . . . . . . . . . Cone4ag1626 . . . Lsi04g01466 Csa04g02495 . . . . . . . . . . Sed13g1819 Cmo01g01833 Cmo09g00301 . . . Car09g00254 . . Bhi09g03205 Tan01g4674 Cmetu07g0333 . Hepe01g1843 Mch11g0377 . . . . . . . . . . Chy07g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00302 Cma_Chr09 FPKM 8.044695 10.09029 9.787231 9.865911 5.817469 5.500709 4.938927 9.222616 10.447804 9.953313