Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00304 ATAAGAGGCGGCAAATACATTGGTGCAGGCCCCATAGGACCATTGAGGCTTGGAGCTTTCATAACTCTGTCTCTGTCTCTGTTTCTGATTCTGATTAAGCCACAGACAGCGCTTCAAATCTCATCTTTCATGGCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAGTTCTATGGAGCCAAGAGTAAGAACTTCTTCCCCAAGCCATGCCTCTCCAGCATGTGGGAAGCTTGATGGTGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCCTTGGAACGATGCTCTTGTATTCGTATTGCCACGGCTGAGGATGACGGCGATGAGGCAAACGACGCCCCCTTAATTCCAAACGACGGGAACCTTCAACAGGACGGCGCTGCTGCTGGTCGGAGGAGGACTGTGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCAATC 465 49.89 IRGGKYIGAGPIGPLRLGAFITLSLSLFLILIKPQTALQISSFMAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1251143 1251927 + CmaCh09G003040.1 Cma09g00304 300309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00304 155 PANTHER PROTEIN, PUTATIVE-RELATED 47 147 - -
Cma09g00304 155 MobiDBLite consensus disorder prediction 117 138 - -
Cma09g00304 155 PANTHER PROTEIN, PUTATIVE-RELATED 47 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00304 - - - cmax:111477268 256.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01131 Cma-Chr2:6696362 Cma09g00304 Cma-Chr9:1251143 5.87E-13 dispersed
Cma09g00304 Cma-Chr9:1251143 Cma01g01773 Cma-Chr1:11897853 1.27E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g618 . Blo12g00994 . . . Bpe04g00147 . . . . . Cma09g00304 Car01g01382 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01464 Csa04g02497 . . . . . . . . . . Sed01g3816 Cmo01g01831 Cmo09g00304 . . . Car09g00256 . . Bhi09g03203 Tan01g4672 Cmetu09g0436 . . . . . . . . . . . . . Chy07g00206 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013825 0 2 0 0 1 1 2 1 1 1 0 0 1 1 1 2 0 2 0 1 0 1 1 1 1 1 0 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00304 Cma_Chr09 FPKM 25.210752 27.680115 40.053585 35.884338 15.27977 16.540453 13.475974 2.071357 1.452759 2.42823