Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00307 ATGAGCTGCAACAACAGAACCCATTCGAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGAGTGCAAGGCAGCAGTGGCGCCGCCGTTTTACCGCCTGGACGACGACGTTCTGGGGCAAAAGCAGCTGCGGGCACCGCCGTGTACTTCGGCGAGAAAGGGCCAGAAGAAGGTGCAGAAAGATGGGGTCTTTGAAAACCCTTTTCTTGCGGCGTTCAGAGAGTGCAGCAATGGAGAGGATGCGAAGAATTGCAAGTTGAAGCAGAATAAAACTGGGTTTGGAGGGTGGATGAACTTGTTTGTCCCATCTCTGCCACTTCCTCGCTTAAACCCTAAAACTCGATTTTACCCACAGCTTCGTGATCCGACCACTCCGGTTTCTTACCCGCTACCTACTGGGTTTGGCGCCACCAATTTTCCCACCGCGACTTCAATCAACAGCCGTAACTTTGGGTCTCTGTTTCTTGCTTTTGGTGGGCTTCAACTGGAAGTTGGCTTAGCTGATCTGTTGTTTCGGCCAGTTATCCCAGCACAACCAGGCCAGACGTTCATTTCATCATCTACCCAACAGTTCCAGTTAGCAGGGCAGAATATATCTTCTTCAAATGTTGGAGGGCCAGCTGGTCAAGTCCAGCCACATCAATATCCTCAATCAATACCGCAGTTAGTTCCAAGGCCTGGCCATCCTACCTACATCACTTCTTCATCCCAGCCTATACAAATGCCTTATGTTCAGACAAGGCCTCTTACTTCTGTCCCACCTCAGTCCCAGCAAAATGTGCCTGCACCAAATAATCATATGCATGGCTTGGGTGCTCATGGACTACCTCTTTCTTCACCATATACCTTCCAGTCAATGTCACAAATGCATGCACCCGTTGGAGTTGGTAATAGCCAACCTTGGCTGTCTTCTGTAAGCCAAACTACAAACACTGTCTCACCGATCGAGCAAGCTAATCAGAACTCTTCAGTTTCTGCCGTAAACCCTCAGTCTTCATCTGATTGGCAAGAGCATTCATCAGCTGATGGAAGAAGGTATTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAGAAGCCATTGGAACTTATGACACCACTTGAGAGGGCTGATGCATCAACTGTGTGGAAGGAATTTACTGCTCCAGATGGAAGAAAGTACTATTACAATAAGGTGACGAAAGAATCAAAGTGGACCATTCCAGAAGAACTGAAGTTGGCTCGTGAGCAGGCTCAGAAAGAAGCTGCCCAAGGAACACAAACAGATATAGCTGCTACAACACCTCAACCTACACCTGCTGTTGGTCTCTCCCATACTGAAACACCAGCAATTTCATCTGTTAACTCCAGCATTTCTCCAACGGTCTCTGGGGTTGCATCGAGTCCTGTTCCAGTCACTCCTTTTGTTTCCGTATCCAATTCTCCTTCAGTGGTGGCTTCTGGGTCATTGACCAATACTGGCACTCCCATTGCTTTAACAACTAGTGTGCCAGGAACAGTTTCTTCTCAATCTGTCGCTGCTTCTGGAGGTACCGGTCCTCCTGCTGTGCTCCATGCCAATGCTTCGTCAGTGACTCCTTTTGAAAGTCTTGCATCTCATGATGTCAAAAATTCTGTTGACGGAACTTCTACAGAAGACATCGAGGAAGCAAGGAAGGGAATGGCAGTTGCAGGAAAAGTTAACGAGACCGTTTTAGAGGAAAAATCTGCTGATGATGAACCTTTAGTATTTGCCAACAAACTGGAGGCGAAGAACGCATTCAAAGCGCTTCTGGAATCTGTCAACGTAAAATCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTAATGACAAAAGATATGGTGCCTTGAAAACTCTTGGTGAACGGAAGCAAGCATTCCATGAGTATTTAGGACACAGGAAAAAATTGGATGCGGAGGAAAGACGCATAAAACAGAAAAAAGCTCGTGAGGAGTTCACCAAGATGTTGGAAGAGTCCAAGGAACTCGCATCATCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAATGATGAACGGTTCAAAGCTGTTGAACGTTCTAGAGACCGGGAGGATCTTTTTGAAAGCTACATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTGCTGAATATAGGAACTTCCTTGAGTCATGTGATTATATAAAGGTGAACAGCCAGTGGCGGAAAGTACAAGATCGATTGGAAGACGATGAAAGATGCTCACGTCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATACGTGACTTGGAAAAGGAGGAAGAGGAGCAGAAAAAGATACAAAAGGAACGTGTGAGACGAATTGAAAGAAAAAACCGTGACGAATTTCGCAAACTCTTGGATGAACAAATTACTGCTGGTATTCTTACAGCTAAGACTTTCTGGCGTGATTACTGTTTGAAGGTCAAGGAGTTGCCTCAGTATCAAGCCGTTGCTTCTAATATATCTGGCTCAACACCAAAGGACTTGTTTGAGGATGTTCTGGAGGAATTAGAGAATAAGTATCATGAAGAAAAAGCTCAGATAAAAGATGTGATGAAGGCAGAGAAGATTACCATCACTTCATCGTGGACGTTTGATGACTTTAAGGCTGCCATTGAAGAGGGTGGTTCTCTTGCAGTTTCAGATATAAATTTTAAGCTTGTATATGAGGACTTACTAGAAAGAACCAAAGAAAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTCTGGCTGATGACTTCTCAGGACTTCTCCATACATTCAAGGAGATTACGAATTCTTCCAACTGGGAGGATAGCAAACATCTTTTTGAAGAGAGTGAAGAATATAGATCAATTGGGGAAGAGAGCTTTGCGAAGGAAGTTTTTGAGGAATACATCATTCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGCGTGAGGAGGAGAAGGCTAAGAAGGAAAAAGAACGTGAGGAAAAAGAGAAGCGGAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAGGATAAGGGCCGGGTTAAGAAGGATGAAACAGATAGTGAAAATGTGGATGCAAGCGAAACTCATGTCTACAGAGAAGACAAGAAAAGGGAGAAGGACAAAGATAGGAAGCATCGTAAGCGACATCATAGTGCCACTGATGATGGTGGTTCTGATAAAGATGAGAGAGAGGAGTCTAAGAAGTCCCGCAAACACGGTAGTGACCGAAAGAAATCAAGGAAGGCACGTGAATGTCCTCTTAGATGCTTGTGA 3312 44.9 MSCNNRTHSRGRVAFSWENKPGECKAAVAPPFYRLDDDVLGQKQLRAPPCTSARKGQKKVQKDGVFENPFLAAFRECSNGEDAKNCKLKQNKTGFGGWMNLFVPSLPLPRLNPKTRFYPQLRDPTTPVSYPLPTGFGATNFPTATSINSRNFGSLFLAFGGLQLEVGLADLLFRPVIPAQPGQTFISSSTQQFQLAGQNISSSNVGGPAGQVQPHQYPQSIPQLVPRPGHPTYITSSSQPIQMPYVQTRPLTSVPPQSQQNVPAPNNHMHGLGAHGLPLSSPYTFQSMSQMHAPVGVGNSQPWLSSVSQTTNTVSPIEQANQNSSVSAVNPQSSSDWQEHSSADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTIPEELKLAREQAQKEAAQGTQTDIAATTPQPTPAVGLSHTETPAISSVNSSISPTVSGVASSPVPVTPFVSVSNSPSVVASGSLTNTGTPIALTTSVPGTVSSQSVAASGGTGPPAVLHANASSVTPFESLASHDVKNSVDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLVFANKLEAKNAFKALLESVNVKSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIKQKKAREEFTKMLEESKELASSTRWSKAVSMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRNFLESCDYIKVNSQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKERVRRIERKNRDEFRKLLDEQITAGILTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLEELENKYHEEKAQIKDVMKAEKITITSSWTFDDFKAAIEEGGSLAVSDINFKLVYEDLLERTKEKEEKEAKRRQRLADDFSGLLHTFKEITNSSNWEDSKHLFEESEEYRSIGEESFAKEVFEEYIIHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKEREREKDKGRVKKDETDSENVDASETHVYREDKKREKDKDRKHRKRHHSATDDGGSDKDEREESKKSRKHGSDRKKSRKARECPLRCL 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1259927 1270338 - CmaCh09G003070.1 Cma09g00307 300312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00307 1103 MobiDBLite consensus disorder prediction 414 440 - -
Cma09g00307 1103 Gene3D FF domain 639 711 IPR036517 -
Cma09g00307 1103 Gene3D FF domain 782 864 IPR036517 -
Cma09g00307 1103 Gene3D FF domain 712 781 IPR036517 -
Cma09g00307 1103 ProSitePatterns WW/rsp5/WWP domain signature. 337 362 IPR001202 GO:0005515
Cma09g00307 1103 ProSiteProfiles FF domain profile. 649 704 IPR002713 -
Cma09g00307 1103 SUPERFAMILY FF domain 641 711 IPR036517 -
Cma09g00307 1103 MobiDBLite consensus disorder prediction 983 1103 - -
Cma09g00307 1103 Coils Coil 765 793 - -
Cma09g00307 1103 Coils Coil 698 727 - -
Cma09g00307 1103 SMART ww_5 373 405 IPR001202 GO:0005515
Cma09g00307 1103 SMART ww_5 332 364 IPR001202 GO:0005515
Cma09g00307 1103 Gene3D FF domain 582 637 IPR036517 -
Cma09g00307 1103 SUPERFAMILY FF domain 784 859 IPR036517 -
Cma09g00307 1103 SUPERFAMILY FF domain 574 635 IPR036517 -
Cma09g00307 1103 ProSiteProfiles FF domain profile. 789 852 IPR002713 -
Cma09g00307 1103 CDD WW 378 405 IPR001202 GO:0005515
Cma09g00307 1103 MobiDBLite consensus disorder prediction 415 440 - -
Cma09g00307 1103 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 168 1095 IPR039726 GO:0045292
Cma09g00307 1103 MobiDBLite consensus disorder prediction 319 339 - -
Cma09g00307 1103 Coils Coil 976 1025 - -
Cma09g00307 1103 Coils Coil 909 929 - -
Cma09g00307 1103 SUPERFAMILY FF domain 709 778 IPR036517 -
Cma09g00307 1103 SUPERFAMILY FF domain 924 985 IPR036517 -
Cma09g00307 1103 Pfam FF domain 719 768 IPR002713 -
Cma09g00307 1103 Pfam FF domain 793 848 IPR002713 -
Cma09g00307 1103 Pfam FF domain 651 701 IPR002713 -
Cma09g00307 1103 Pfam FF domain 584 633 IPR002713 -
Cma09g00307 1103 ProSiteProfiles FF domain profile. 710 771 IPR002713 -
Cma09g00307 1103 MobiDBLite consensus disorder prediction 251 266 - -
Cma09g00307 1103 Gene3D - 374 419 - -
Cma09g00307 1103 ProSiteProfiles WW/rsp5/WWP domain profile. 331 364 IPR001202 GO:0005515
Cma09g00307 1103 Pfam WW domain 378 403 IPR001202 GO:0005515
Cma09g00307 1103 Pfam WW domain 335 362 IPR001202 GO:0005515
Cma09g00307 1103 SUPERFAMILY WW domain 365 406 IPR036020 GO:0005515
Cma09g00307 1103 MobiDBLite consensus disorder prediction 251 275 - -
Cma09g00307 1103 ProSiteProfiles WW/rsp5/WWP domain profile. 372 405 IPR001202 GO:0005515
Cma09g00307 1103 SMART FF_2 649 704 IPR002713 -
Cma09g00307 1103 SMART FF_2 791 852 IPR002713 -
Cma09g00307 1103 SMART FF_2 717 771 IPR002713 -
Cma09g00307 1103 SMART FF_2 923 978 IPR002713 -
Cma09g00307 1103 SMART FF_2 582 636 IPR002713 -
Cma09g00307 1103 Gene3D FF domain 916 991 IPR036517 -
Cma09g00307 1103 Coils Coil 843 870 - -
Cma09g00307 1103 Gene3D - 317 373 - -
Cma09g00307 1103 MobiDBLite consensus disorder prediction 983 1053 - -
Cma09g00307 1103 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 168 1095 - -
Cma09g00307 1103 MobiDBLite consensus disorder prediction 1062 1084 - -
Cma09g00307 1103 SUPERFAMILY WW domain 336 370 IPR036020 GO:0005515
Cma09g00307 1103 ProSiteProfiles FF domain profile. 582 636 IPR002713 -
Cma09g00307 1103 MobiDBLite consensus disorder prediction 319 342 - -
Cma09g00307 1103 CDD WW 335 364 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00307 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1464.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01771 Cma09g00307 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00307 Cma-Chr9:1259927 Cma08g01286 Cma-Chr8:7784288 5.65E-07 dispersed
Cma17g00625 Cma-Chr17:5324071 Cma09g00307 Cma-Chr9:1259927 1.36E-35 transposed
Cma01g01771 Cma-Chr1:11880975 Cma09g00307 Cma-Chr9:1259927 0 wgd
Cma04g00435 Cma-Chr4:2221369 Cma09g00307 Cma-Chr9:1259927 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00307 Cma_Chr09 FPKM 20.398853 23.755323 21.781582 23.039801 30.487728 32.419235 30.583059 29.45446 29.304911 26.939051