Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00308 ATGACTATGGAAGTTACTTCTGAATCTCAGCAACATTCTCTCTACCACCACCAAAGCCAGCCAACTCCAGCAATAGCTATCTCCAACACCATGTCAAATAGCTTCTCAGCTTCCCAGCACTACAATGGTGATTTTCTGTCTCCCCTGTCTGTAATGCCGCTCAAGTCAGATGGGTCTCTTTGTATCATGGACTCAATCAGCAGATCACAAACTCCAGAAACATTGCCAAACATCTCCCCAAAACTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGAGAGACGGCCACAGCTCTAAGCTTAGACAGCAGATATTACAATCAAAATCCTGAGGCTAACTCTGAGAGACAACAAAGTATTCTTCTTCATTCTCAGCGATACTATTCAGGAATGTTCCATTATCCTGCTGAGGATGTCAACAAGGAGTCTCATATTGCAAGTTATTGCTCTGAAATTCGACAAGATATGGAGCAGCGCATCAATGGCTGCTTTGGAGGAGGGAGGAATTGCCAAGACTTGCAGACACTTAGCTTGTCCATGAGCCCTGGCTCTCAGTCTAGTTGTGTTACTACACCAAGCCAAATTTCTCAATCTGGACAAGCCACCATGGAGACAAAGAAAAGGGCTTTGGCTGATCGAAAGCAGCCGGTCCATCGGAAGTCGTTCGACACGTTCGGACAAAGAACTTCACAGTATAGAGGTGTTACAAGACATAGATGGACCGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGGAGACAAGTTTATCTCGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCCTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACACTTAAACTTCCCATTGAAGAACTATGAACTTCAAATTGAAGAAATGATGAACATGAACCGCCAAGAATATGTCGCGCACCTGAGAAGGAAAAGCAGTGGATTCTCGAGGGGAGCTTCCATATACAGAGGAGTAACTAGACATCATCAGAATGGGAGATGGCAAGCTCGGATTGGAAGAGTCGCGGGGAACAAAGACCTTTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTCCGTGGCATAAACGCCGTGACAAACTTCGACACTTCAAGGTACGACGTAGAAAGGATCATGGCAAGCAGTAGCCTCCTTTCAGGAGAATTTGCCAGACGAAATAGAGAGCACAAACCAACCAATGCCATCAAACATGAAGAACCAAAGCAGAACATCCCTCGAACCGATCCCGCGGAAGTATACAACAACAATTTAGATTGGAGGACGGTATTCCACGACAACCTGCTGCTGGATCCAAGCGCAAGCATTGAATCCACAGACCAAAAGTCCATGGCCTCGAGCGGCGGATACCTGAATAATCTGATCGGAGTCGTCGTCGAAACTGAAGGTTCAAGCAAGTACAAGGCTCACTTCTCCAATGCTTCATCTGTGGTGAGCAGCTTGAGCAGCTCAAGGGAAACTAGTCCTGACAAGCCAAATGGCTCCTCCTGGTTCCATTTGGAAGCAATGGAAGAAGTATATGGCTCCCATCACCACCGCAAATGA 1629 46.35 MTMEVTSESQQHSLYHHQSQPTPAIAISNTMSNSFSASQHYNGDFLSPLSVMPLKSDGSLCIMDSISRSQTPETLPNISPKLEDFLGGATHGRETATALSLDSRYYNQNPEANSERQQSILLHSQRYYSGMFHYPAEDVNKESHIASYCSEIRQDMEQRINGCFGGGRNCQDLQTLSLSMSPGSQSSCVTTPSQISQSGQATMETKKRALADRKQPVHRKSFDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYELQIEEMMNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQNGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGINAVTNFDTSRYDVERIMASSSLLSGEFARRNREHKPTNAIKHEEPKQNIPRTDPAEVYNNNLDWRTVFHDNLLLDPSASIESTDQKSMASSGGYLNNLIGVVVETEGSSKYKAHFSNASSVVSSLSSSRETSPDKPNGSSWFHLEAMEEVYGSHHHRK 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1272511 1275701 + CmaCh09G003080.1 Cma09g00308 300313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00308 542 CDD AP2 332 393 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 ProSiteProfiles AP2/ERF domain profile. 231 297 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 SUPERFAMILY DNA-binding domain 230 298 IPR016177 GO:0003677
Cma09g00308 542 CDD AP2 230 297 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 SMART rav1_2 333 397 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 SMART rav1_2 231 303 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 168 522 - -
Cma09g00308 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 127 - -
Cma09g00308 542 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 PRINTS Ethylene responsive element binding protein signature 373 393 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 ProSiteProfiles AP2/ERF domain profile. 333 391 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 19 127 - -
Cma09g00308 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 168 522 - -
Cma09g00308 542 MobiDBLite consensus disorder prediction 411 434 - -
Cma09g00308 542 SUPERFAMILY DNA-binding domain 332 392 IPR016177 GO:0003677
Cma09g00308 542 MobiDBLite consensus disorder prediction 411 439 - -
Cma09g00308 542 Pfam AP2 domain 231 289 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 Pfam AP2 domain 333 383 IPR001471 GO:0003700|GO:0006355
Cma09g00308 542 Gene3D AP2/ERF domain 333 393 IPR036955 GO:0003700|GO:0006355
Cma09g00308 542 Gene3D AP2/ERF domain 230 299 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00308 Cma12g00614 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00037 Cma-Chr1:141200 Cma09g00308 Cma-Chr9:1272511 6.29E-132 dispersed
Cma09g00308 Cma-Chr9:1272511 Cma11g00388 Cma-Chr11:1927730 4.10E-114 dispersed
Cma01g01756 Cma-Chr1:11818737 Cma09g00308 Cma-Chr9:1272511 0 wgd
Cma12g00614 Cma-Chr12:3226740 Cma09g00308 Cma-Chr9:1272511 8.38E-172 wgd
Cma03g00890 Cma-Chr3:6544296 Cma09g00308 Cma-Chr9:1272511 2.41E-164 wgd
Cma05g00122 Cma-Chr5:533391 Cma09g00308 Cma-Chr9:1272511 0 wgd
Cma07g00631 Cma-Chr7:2740186 Cma09g00308 Cma-Chr9:1272511 1.60E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35599 PF00847 AP2 1.20E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00308 K09285 - csv:101212143 828.935