Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00309 ATGGGTGATCTCGAAAACGACGAAATGGGTTTTCGAAATTCAAACGAGGGGTTACGGAATTGTTCATCTTCCGACAAAATTCCAGGAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCAATGGTTTCTTCCCATGGCGAATTTTCAAATTCTTTTCCTGTTGTCTTGGAGAGCCATGGAGGGAGTGGGACGACACAGGGTGTTCATTATCCGACAGATTTGGGGTTTGGCAATGGGAATTATTCCGACATGTTTGGTTCTTTTGGTGTTGCCGGGCAGATTCTTGGTGGGTGTTCTTCCAATTACAGAAATGGAGGAACCACGGAGAAGTTATTACCACTATCAGGTGAAGAAACTGCTGCAGGATCACCAAATGGTAAACTCAGAAAACGAGCCCTTGACTCCACTTTCCCATTTAGCCAACCAAACAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAGGAAGAGAAGAACGCAGAAATGGAGCAGAATTTAGGTGGTAAGGCAACTGGAAAACAAGCTAAAGAGAAGAACAATGATAGCACAGAAGCTCCCAAGGAGAATTACATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAGCGGATGAGATTGCTTCAAGAGCTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTTATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCAGACGTGAACGTCGATATCGAAAGGATTTTATCCAATGATATTTTCCACGCACGAGGCAGCATCGGAACTGTTCTTGGATATGATCCCGGGTTGAGCGCGGTTTCCCCGGTCCCTCCTCACCGAATATTTCAGCTCCAGGGGACGATGTCAAATATGCCAACCAACACCACATTCACACAGTTTCCTCCTTTGCCTCAGACCGTGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGAGTTCGGGCACTCACAATTTGGAACCAAATGGGCGGTTTAAACCAGAGCGCTAA 1128 45.48 MGDLENDEMGFRNSNEGLRNCSSSDKIPGTMAMGSFFGSGWDPMVSSHGEFSNSFPVVLESHGGSGTTQGVHYPTDLGFGNGNYSDMFGSFGVAGQILGGCSSNYRNGGTTEKLLPLSGEETAAGSPNGKLRKRALDSTFPFSQPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGKATGKQAKEKNNDSTEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSNDIFHARGSIGTVLGYDPGLSAVSPVPPHRIFQLQGTMSNMPTNTTFTQFPPLPQTVLESDIQSLLQMGFDSSSGTHNLEPNGRFKPER 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1278151 1281429 + CmaCh09G003090.1 Cma09g00309 300314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00309 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 259 IPR011598 GO:0046983
Cma09g00309 375 SMART finulus 215 265 IPR011598 GO:0046983
Cma09g00309 375 Gene3D - 206 279 IPR036638 GO:0046983
Cma09g00309 375 MobiDBLite consensus disorder prediction 148 162 - -
Cma09g00309 375 Pfam Helix-loop-helix DNA-binding domain 212 260 IPR011598 GO:0046983
Cma09g00309 375 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 374 IPR024097 GO:0006355
Cma09g00309 375 MobiDBLite consensus disorder prediction 184 201 - -
Cma09g00309 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 274 IPR036638 GO:0046983
Cma09g00309 375 CDD bHLH_AtBPE_like 199 284 - -
Cma09g00309 375 MobiDBLite consensus disorder prediction 356 375 - -
Cma09g00309 375 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 32 374 - -
Cma09g00309 375 MobiDBLite consensus disorder prediction 1 22 - -
Cma09g00309 375 MobiDBLite consensus disorder prediction 112 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00309 Cma-Chr9:1278151 Cma18g01076 Cma-Chr18:8899573 2.64E-55 dispersed
Cma01g01757 Cma-Chr1:11826780 Cma09g00309 Cma-Chr9:1278151 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35600 PF00010 HLH 3.80E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00309 - - cpep:111797605 678.707