Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00312 ATGACGATTATCGTTGCCGCCGACAGAAAGTACCGGCGGAGCCCTAGAAAGTCCCTACTCCCTGAAAAATACGCCCATCAGGAGCCTCTGGAAGGGTTAGAGGGCGCGTCGTTCTCCGGCGCCGTCTTCAACCTCTCGAGCACCATCGTCGGGGCTGGTATCATGGCTCTCCCGGCCGCCGTGAAGCAATTAGGTCTAATTCCAGGCTTAGTCATGATCATCCTCGGTTCTACATTGACGGAGTTGTCAATTGACTTTATCCTAAAATTCTCTCGGACATCCAAATCCGCTACGTACGCCGGCGCCGTCAGCGACTCTCTCGGAAGCGTCGGACGGACCCTCTTGCAGGTTTGCATCGTGGTCAATAACTTGGGTATGCTCATCGTCTACATGATCATCATCGGCGATGTGTTTTCGGGAACAACCACAAATAACGTCCACCATAAGGGCGTGATGGAAGAATGGTTCGGTCAACATTGGTGGACCAGCCGCACATCCTTGATGCTGTTTACCACGCTTCTAATTTTTGCGCCTCTAATCTCCTTCAAACGCGTAGATTCCTTGAGATACACATCATCTTTGTCAGTGGGCTTGGCCATTGTCTTCGTGGCAATCACTGCTGGAGTATCCATTGCAAAATTGATGGATGGGAGTATTGGAATGCCGCGACTGATGCCTGAACTTTTCGATCAGGCATCATTTTGGCAACTTTTTACCACTGTTCCAATCCTAGTCACTGCCTATATCTGTCACCATAATGTTCTCCCAATTGAGAATGAGCTGAAAGATCCGACACAAATGAAATCAATAGTTCGAACATCTCTAATAATATGCTCGTCGTTATATATCGCGACGAGCTTCTTCGGATTTATCCTGTTTGGAGACCAAACGTTGGATGATGTCCTTGCCAATTTCGATGGAGATCTTGGGCTTCCATACAGCTCGTTGCTTGATGATGTTGTGAGGGTGAGCTATGGCATCCACCTGATGCTTGTTTTTCCAATTGTTTTCTTCTCCCTTCGCCTCAACGTTGACGGCCTGCTCTTTCCCTGTGCCATACCTATTGCTTTCAATAACCGACGATTCTTCTCAATAACCGTAGCTCTCATGAGTTTCATCTTCATTGGAGCTAACTTTGTTCCCAGCATCTGGGATGCCTTTCAGCTCACTGGAGCCACTGCTGCCATCTCTGTTGGGTTCATATTTCCCGCCGCTCTCGTCCTCAGAGACACTTGTGGGATTGCATCAAAGAAAGACAGGGTGATAGCATGGTTAATGTTCCTACTAGCTGTTTTGTCAAGTATGGCTGCAATCTCCAGCGATATCTACAGTACTTACGTGGTCGAGAAACGCGCTTGA 1359 48.2 MTIIVAADRKYRRSPRKSLLPEKYAHQEPLEGLEGASFSGAVFNLSSTIVGAGIMALPAAVKQLGLIPGLVMIILGSTLTELSIDFILKFSRTSKSATYAGAVSDSLGSVGRTLLQVCIVVNNLGMLIVYMIIIGDVFSGTTTNNVHHKGVMEEWFGQHWWTSRTSLMLFTTLLIFAPLISFKRVDSLRYTSSLSVGLAIVFVAITAGVSIAKLMDGSIGMPRLMPELFDQASFWQLFTTVPILVTAYICHHNVLPIENELKDPTQMKSIVRTSLIICSSLYIATSFFGFILFGDQTLDDVLANFDGDLGLPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPCAIPIAFNNRRFFSITVALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALVLRDTCGIASKKDRVIAWLMFLLAVLSSMAAISSDIYSTYVVEKRA 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1290178 1293397 - CmaCh09G003120.1 Cma09g00312 300317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00312 452 PANTHER AMINO ACID TRANSPORTER AVT6A 12 445 - -
Cma09g00312 452 PANTHER AMINO ACID TRANSPORTER 12 445 - -
Cma09g00312 452 Pfam Transmembrane amino acid transporter protein 36 438 IPR013057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00312 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - csv:101204458 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01084 Cma-Chr4:5585414 Cma09g00312 Cma-Chr9:1290178 6.23E-140 dispersed
Cma08g00608 Cma-Chr8:3428352 Cma09g00312 Cma-Chr9:1290178 5.75E-117 dispersed
Cma09g00312 Cma-Chr9:1290178 Cma14g01140 Cma-Chr14:8881808 0 dispersed
Cma09g00312 Cma-Chr9:1290178 Cma04g00118 Cma-Chr4:566938 8.98E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00028 . 108 479 Amino Acid/Auxin Permease AAAP Family AT2G41190 66.6 1.8e-137 486.9
Cma14g00509 CST 1 267 Amino Acid/Auxin Permease AAAP Family AT2G41190 55.8 3.3e-83 306.6
Cma14g01140 . 3 477 Amino Acid/Auxin Permease AAAP Family AT3G30390 65.5 6.1e-169 591.3
Cma09g00312 . 19 446 Amino Acid/Auxin Permease AAAP Family AT3G30390 58.4 3.1e-144 509.2
Cma11g01022 . 38 258 Amino Acid/Auxin Permease AAAP Family AT3G28960 63.3 2.9e-82 303.1
Cma14g01140 . 20 471 Amino Acid/Auxin Permease AAAP Family AT5G38820 64.8 3.2e-162 568.9
Cma09g00312 . 35 446 Amino Acid/Auxin Permease AAAP Family AT5G38820 58.2 1.5e-138 490.3
Cma17g00879 CST 53 538 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.5 2.7e-183 639.0
Cma08g00608 CST 3 468 Amino Acid/Auxin Permease AAAP Family AT1G80510 66.7 1.1e-171 600.5
Cma15g00474 CST 30 549 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.5 7.6e-134 474.9
Cma15g00474 CST 1 483 Amino Acid/Auxin Permease AAAP Family AT2G39130 66.9 1.2e-175 613.6
Cma04g02562 CST 344 765 Amino Acid/Auxin Permease AAAP Family AT2G39130 64.4 6.4e-148 521.5
Cma11g01022 . 95 258 Amino Acid/Auxin Permease AAAP Family AT5G15240 58.8 1.0e-51 201.4
Cma04g01084 CST 10 427 Amino Acid/Auxin Permease AAAP Family AT3G56200 58.9 1.8e-133 473.4
Cma04g00118 CST 6 424 Amino Acid/Auxin Permease AAAP Family AT3G56200 58.8 5.9e-129 458.4
Cma04g01083 . 8 446 Amino Acid/Auxin Permease AAAP Family AT3G56200 54.6 7.4e-124 441.4
Cma15g00474 CST 1 497 Amino Acid/Auxin Permease AAAP Family AT3G54830 61.7 2.9e-165 579.3
Cma04g02562 CST 344 765 Amino Acid/Auxin Permease AAAP Family AT3G54830 61.7 3.8e-141 499.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00312 Cma_Chr09 FPKM 3.136412 4.14887 1.422698 1.849058 3.732542 3.467305 3.287452 1.8368 1.560038 2.200658