Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00319 ATGGCGCTGCCGGCGTCAATTCCGCTGCCCTCCGTATCTCCCACGTCCAGGATTAGACTGCTCAAGGAGAAACCATCGTTCGGGCCTAATAGCTGCTTGCTGCTGCTTGGCAGTCGCCGATCTACCATTGCTTGTTCAATGAAAGCAAAAATGGCTGGGTTTATGGATTCTAATTCTATGCCCATACGAATTGAAAATTTGAAAGAGAAGATGCAAGAGGTCATGCCTGAACCCGTCAAAACTTTTCCATGGAAGGATGCAGAGAAGATACTGGTGGAGAGACTGCTTTTTATGGGAAAGGAGACAGTGAAGTGGTCTGTTCTCTTGTTCTTTGTTGTTAGCTCCTTATCAGATTTTGTAGCATCTATAGTTAAAAACCAGGAGTTATTGATTCCCATTGGTCTCTTTGCTGGTGTCTTGTTGACTAACCTTTTAAAAGAGATATCTCAAGAAGTGTTCGGCAACTCTGAGGATTCGAGTTTCAAAAAGAAACTTTACGGTCTCGGTTCCTTCTTCGTTCTTGCGAAGCTAATTACTTATGGCCTCACAATTCAAGTACAGACATTTCCTCTGCATGTAGCAAATGGTGGGTTAATGCAAGTTTTGTGGCTGTGGAAAAATTTGTCAAGAGAAACAAATCGACTGGATGAACAGAGCCCTTCTGTCGGTGAAGGTACGTCTTAA 684 43.42 MALPASIPLPSVSPTSRIRLLKEKPSFGPNSCLLLLGSRRSTIACSMKAKMAGFMDSNSMPIRIENLKEKMQEVMPEPVKTFPWKDAEKILVERLLFMGKETVKWSVLLFFVVSSLSDFVASIVKNQELLIPIGLFAGVLLTNLLKEISQEVFGNSEDSSFKKKLYGLGSFFVLAKLITYGLTIQVQTFPLHVANGGLMQVLWLWKNLSRETNRLDEQSPSVGEGTS 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1309870 1312202 - CmaCh09G003190.1 Cma09g00319 300324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00319 227 PANTHER DEFECTIVE 1273 PROTEIN, PUTATIVE-RELATED 1 222 - -
Cma09g00319 227 PANTHER PROTEIN, PUTATIVE-RELATED 1 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00319 - - - bhj:120087328 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00319 Cma-Chr9:1309870 Cma11g01771 Cma-Chr11:11845780 5.73E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g596 . . . . . . . . . . . Cma09g00319 . . . Cpe06g00225 . . . . . . . . . . . . . . . Cone4ag1640 . . . Lsi04g01449 Csa04g02510 . . . . . . . . . . Sed11g1867 . Cmo09g00317 . . . Car09g00268 . . Bhi09g03185 Tan01g4655 Cmetu07g1095 . Hepe01g1857 Mch11g0391 . Cla05g01807 Cam05g1929 Cec05g1941 Cco05g2004 Clacu05g1921 Cmu05g1803 Cre05g1929 . . Chy07g00217 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011862 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00319 Cma_Chr09 FPKM 10.633499 12.792459 29.075432 27.131145 42.358276 35.524204 42.922199 40.022366 36.975288 41.68713