Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00320 ATGGGAAGAGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAGGGTCCATGGTCGCCCGATGAAGATGCGAAGCTCAAATTCTATATCGAGCAGCACGGTACAGGTGGAAACTGGATCGCGCTGCCTCAGAAAATCGGTCTTAAGCGATGTGGGAAAAGTTGTCGACTCCGTTGGTTGAACTACCTTCGTCCGAATATTAAGCACGGGGATTTCACTGAAGAAGAAGATAGAATAATTTGCAGCCTTTATGTAAACATTGGAAGCAGATGGTCGATTATTGCGGCTCAATTGCCTGGAAGAACAGATAACGATATAAAGAACTACTGGAACACGAGGTTGAAGAAGAGATTATATGGGAAGCACCACGAGAAGCAACAACAACCGGTGAGAAGAGGAAGAAAAATCAAATCCGAAATTGGAAATTCCATGGATATTGTCTTTGATAATCATGTTATTTATGATAATGATAATAACCAATTACCTTTCTTGCCGGAGTTAACCACGGCGCTCAATTCGCCGCCGCCACCTCCGCCGTATGCAAATTACCAACCGCTTCAATTCCCTTCAACTCCTCAGCAACTTTCCGGCGTTGATCTGAGCAGAAGAGACGATGTCCAGTTTGAAATGGATGGGGGTTCGTGTCTACCGGCCACGAGCTGCCAAGTAGGTGAGTTGGAGAAGGTTGTTTACAGCAATACGGCGTCGTTTGAGGATGGGCTGCAGTTTTCATATGATAACAATGGGTTGATGAACGATCTAGATTGGGGGGAAATGAGTTGTTTGATTTCTGCTCCTTCATATTCCTCAATGGCTCATGATTCCATGATTGGTTCGTCTTATTTGGAGCAGCAAAAGCAAAAGCAATAG 867 44.87 MGRAPCCDKANVKKGPWSPDEDAKLKFYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGDFTEEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKRLYGKHHEKQQQPVRRGRKIKSEIGNSMDIVFDNHVIYDNDNNQLPFLPELTTALNSPPPPPPYANYQPLQFPSTPQQLSGVDLSRRDDVQFEMDGGSCLPATSCQVGELEKVVYSNTASFEDGLQFSYDNNGLMNDLDWGEMSCLISAPSYSSMAHDSMIGSSYLEQQKQKQ 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1313985 1315370 - CmaCh09G003200.1 Cma09g00320 300325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00320 288 CDD SANT 71 113 IPR001005 -
Cma09g00320 288 Gene3D - 7 68 - -
Cma09g00320 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cma09g00320 288 Gene3D - 70 139 - -
Cma09g00320 288 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cma09g00320 288 CDD SANT 16 62 IPR001005 -
Cma09g00320 288 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cma09g00320 288 SMART sant 13 64 IPR001005 -
Cma09g00320 288 SMART sant 67 115 IPR001005 -
Cma09g00320 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cma09g00320 288 PANTHER OS09G0431300 PROTEIN 1 134 - -
Cma09g00320 288 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cma09g00320 288 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cma09g00320 288 PANTHER OS09G0431300 PROTEIN 1 134 - -
Cma09g00320 288 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00320 Cma12g00620 CCT
Cma05g00116 Cma09g00320 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00320 Cma-Chr9:1313985 Cma12g01006 Cma-Chr12:8035974 4.95E-75 dispersed
Cma01g01763 Cma-Chr1:11853801 Cma09g00320 Cma-Chr9:1313985 2.21E-152 wgd
Cma12g00620 Cma-Chr12:3265537 Cma09g00320 Cma-Chr9:1313985 1.22E-83 wgd
Cma03g00883 Cma-Chr3:6503496 Cma09g00320 Cma-Chr9:1313985 2.54E-83 wgd
Cma05g00116 Cma-Chr5:503339 Cma09g00320 Cma-Chr9:1313985 7.57E-84 wgd
Cma07g00624 Cma-Chr7:2704789 Cma09g00320 Cma-Chr9:1313985 1.59E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35601 PF00249 Myb_DNA-binding 8.60E-13 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00320 K09422 - csv:101212385 432.95