Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00321 ATGGATGCCGATTGTAACGCGGGGCTTCTTCTTGGGCTGGGGCGGGGTTTGGATCATCATAATTCCATGCGCCCGCTCGTACCGGATGTGGCTGGTGTTAAGAAGAAGCTTCAGGTGTTGAAATTTGATGATATTTTGCCTTCTCTGACGCTTGGATTGTCGGTTGTTGTCGAGAAGAGCGGCGGAGAATCCGCTGCGGACGACTTGATTCACCAGGGCTCTTCGGGTAGTCCGGCGTCGTCGTTTTCTAACTCATCGGGGTTTAAAAGGGAGCGAGACGGCGGCGCCGGCGAAGAGCCGGCTGAAGCGGAGGTGTTTATGGAGAGAATCTCGATGAAAGTTGCTGAAGAAGAGGAAGATGGAAGCCCGAGGAAGAAACTTAGACTCACTAAAGAACAATCCGCCGTTTTAGAAGATAATTTCAAAGAACACTCCAGCCTCAGTCCTAAGCAAAAACAGGATTTGGCAAGACAGTTAAACCTAAGACCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACGGAAATGGACTGTGAATTACTGAAGAAATGCTGTGAAAAGCTCAAAGAAGAGAACACCAAGCTTCAAAAGGAACTTCAAGAGCTTAAATCCCTCAAATTAACTGCCCCGCCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCCTGTGAGAGCTCCATTTGCGGCGGCGGCGGTGGCGGAGGAGGCGCCGATGCTTCTCCAGCTAACACCTTCTCAATTGGGTCAAAGCCTCACTTTCTCAAATTCCCCTTTAACCACCCATCGGCGGCTTGTTAA 834 50.12 MDADCNAGLLLGLGRGLDHHNSMRPLVPDVAGVKKKLQVLKFDDILPSLTLGLSVVVEKSGGESAADDLIHQGSSGSPASSFSNSSGFKRERDGGAGEEPAEAEVFMERISMKVAEEEEDGSPRKKLRLTKEQSAVLEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTKLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCESSICGGGGGGGGADASPANTFSIGSKPHFLKFPFNHPSAAC 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1324538 1325875 + CmaCh09G003210.1 Cma09g00321 300326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00321 277 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Cma09g00321 277 CDD homeodomain 123 181 IPR001356 GO:0003677
Cma09g00321 277 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Cma09g00321 277 SMART halz 180 223 IPR003106 GO:0006355|GO:0043565
Cma09g00321 277 MobiDBLite consensus disorder prediction 70 88 - -
Cma09g00321 277 Pfam Homeobox associated leucine zipper 180 213 IPR003106 GO:0006355|GO:0043565
Cma09g00321 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 6 277 - -
Cma09g00321 277 Coils Coil 179 216 - -
Cma09g00321 277 MobiDBLite consensus disorder prediction 66 104 - -
Cma09g00321 277 SUPERFAMILY Homeodomain-like 121 188 IPR009057 -
Cma09g00321 277 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Cma09g00321 277 Gene3D - 130 176 - -
Cma09g00321 277 PANTHER - 6 277 - -
Cma09g00321 277 SMART HOX_1 122 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00321 Cma-Chr9:1324538 Cma08g00556 Cma-Chr8:3178646 6.71E-60 dispersed
Cma01g01764 Cma-Chr1:11857318 Cma09g00321 Cma-Chr9:1324538 4.68E-82 wgd
Cma03g00879 Cma-Chr3:6478531 Cma09g00321 Cma-Chr9:1324538 1.49E-65 wgd
Cma07g00621 Cma-Chr7:2669609 Cma09g00321 Cma-Chr9:1324538 6.50E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35602 PF00046 Homeodomain 2.20E-17 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00321 K09338 - csv:101212868 340.887