Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00321 | ATGGATGCCGATTGTAACGCGGGGCTTCTTCTTGGGCTGGGGCGGGGTTTGGATCATCATAATTCCATGCGCCCGCTCGTACCGGATGTGGCTGGTGTTAAGAAGAAGCTTCAGGTGTTGAAATTTGATGATATTTTGCCTTCTCTGACGCTTGGATTGTCGGTTGTTGTCGAGAAGAGCGGCGGAGAATCCGCTGCGGACGACTTGATTCACCAGGGCTCTTCGGGTAGTCCGGCGTCGTCGTTTTCTAACTCATCGGGGTTTAAAAGGGAGCGAGACGGCGGCGCCGGCGAAGAGCCGGCTGAAGCGGAGGTGTTTATGGAGAGAATCTCGATGAAAGTTGCTGAAGAAGAGGAAGATGGAAGCCCGAGGAAGAAACTTAGACTCACTAAAGAACAATCCGCCGTTTTAGAAGATAATTTCAAAGAACACTCCAGCCTCAGTCCTAAGCAAAAACAGGATTTGGCAAGACAGTTAAACCTAAGACCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACGGAAATGGACTGTGAATTACTGAAGAAATGCTGTGAAAAGCTCAAAGAAGAGAACACCAAGCTTCAAAAGGAACTTCAAGAGCTTAAATCCCTCAAATTAACTGCCCCGCCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCCTGTGAGAGCTCCATTTGCGGCGGCGGCGGTGGCGGAGGAGGCGCCGATGCTTCTCCAGCTAACACCTTCTCAATTGGGTCAAAGCCTCACTTTCTCAAATTCCCCTTTAACCACCCATCGGCGGCTTGTTAA | 834 | 50.12 | MDADCNAGLLLGLGRGLDHHNSMRPLVPDVAGVKKKLQVLKFDDILPSLTLGLSVVVEKSGGESAADDLIHQGSSGSPASSFSNSSGFKRERDGGAGEEPAEAEVFMERISMKVAEEEEDGSPRKKLRLTKEQSAVLEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTKLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCESSICGGGGGGGGADASPANTFSIGSKPHFLKFPFNHPSAAC | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1324538 | 1325875 | + | CmaCh09G003210.1 | Cma09g00321 | 300326 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00321 | 277 | ProSiteProfiles | 'Homeobox' domain profile. | 120 | 180 | IPR001356 | GO:0003677 | |
Cma09g00321 | 277 | CDD | homeodomain | 123 | 181 | IPR001356 | GO:0003677 | |
Cma09g00321 | 277 | Pfam | Homeodomain | 124 | 178 | IPR001356 | GO:0003677 | |
Cma09g00321 | 277 | SMART | halz | 180 | 223 | IPR003106 | GO:0006355|GO:0043565 | |
Cma09g00321 | 277 | MobiDBLite | consensus disorder prediction | 70 | 88 | - | - | |
Cma09g00321 | 277 | Pfam | Homeobox associated leucine zipper | 180 | 213 | IPR003106 | GO:0006355|GO:0043565 | |
Cma09g00321 | 277 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 | 6 | 277 | - | - | |
Cma09g00321 | 277 | Coils | Coil | 179 | 216 | - | - | |
Cma09g00321 | 277 | MobiDBLite | consensus disorder prediction | 66 | 104 | - | - | |
Cma09g00321 | 277 | SUPERFAMILY | Homeodomain-like | 121 | 188 | IPR009057 | - | |
Cma09g00321 | 277 | ProSitePatterns | 'Homeobox' domain signature. | 155 | 178 | IPR017970 | GO:0000981|GO:0006355 | |
Cma09g00321 | 277 | Gene3D | - | 130 | 176 | - | - | |
Cma09g00321 | 277 | PANTHER | - | 6 | 277 | - | - | |
Cma09g00321 | 277 | SMART | HOX_1 | 122 | 184 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00321 | Cma-Chr9:1324538 | Cma08g00556 | Cma-Chr8:3178646 | 6.71E-60 | dispersed | |
Cma01g01764 | Cma-Chr1:11857318 | Cma09g00321 | Cma-Chr9:1324538 | 4.68E-82 | wgd | |
Cma03g00879 | Cma-Chr3:6478531 | Cma09g00321 | Cma-Chr9:1324538 | 1.49E-65 | wgd | |
Cma07g00621 | Cma-Chr7:2669609 | Cma09g00321 | Cma-Chr9:1324538 | 6.50E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35602 | PF00046 | Homeodomain | 2.20E-17 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00321 | K09338 | - | csv:101212868 | 340.887 |