Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00322 ATGGAGGAATATAATAATCATGTAAACGAAAACTCAAATCCGAGAGGGAATTTCTTGTACCCATCGGGAGTGGTTCGGGGGAATTCTTCATCAGGTAATTTCGGAAGGTCATCCAATCCGACGGCTCAGATGGGTCTCAATTCCTTTCATCTTCAACAAGGAACCGACTGCTTTCAAACCGACCATTCCCACCCGATTGTCAAGACGGAAGCCAGTTCTTCACACCATCAACTCCACAAATTTCACCACCCTTTACTCAGAGGAGGAGGAGGGCAGCCGCCGCCGACGACATGTCGGCCTGACCAACACGGCTTACTCGATGTTGAAGCCATTAAGGCCAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAAAAGGTGGGTGCTCCGCCGCAAGTGGTGGAACGGCTGGTGGCGGCTCGGCATGAATTCGAAACACGGCAGCGATCTTCCATGGTTTCTGGAGAGACCATTAAGGATCCAGAACTTGACCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACGAGGCCGATTCAAGAAGCCATGGATTTCATGCGACGGGTCGAATCTCAGCTCAGCTCTCTCTGCAACGGCCCACTTCGGATCTTCAATTCCGATGAGAAGTGTGAGGGTATGGGGTCCTCGGAGGAGGAACAGGAAAATAGCGGCGGAGAAACCGAACTACCGGAGATCGACCCACGTGCCGAAGACAGAGAATTGAAGAACCACCTATTGAGAAAGTACAGTGGCTACTTGAGCAGTCTGAAGCAAGAACTTTCAAAGAAGAAGAAAAAGGGAAAACTCCCAAAAGATGCAAGGCAGAAACTTCTTAATTGGTGGGAGTTGCACTACAAATGGCCATACCCTTCAGAGACGGAGAAGGTGGCATTGGCTGAGTCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCCTCTGAAGATATGCAGTTCATGGTGATGGATGGGCTTCACCCTCCCAACACCACCCTCTATATCGACGGTCACTACATGACCGATGCCCATTATCGACTCGGACCGTGA 1116 49.28 MEEYNNHVNENSNPRGNFLYPSGVVRGNSSSGNFGRSSNPTAQMGLNSFHLQQGTDCFQTDHSHPIVKTEASSSHHQLHKFHHPLLRGGGGQPPPTTCRPDQHGLLDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARHEFETRQRSSMVSGETIKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRVESQLSSLCNGPLRIFNSDEKCEGMGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNTTLYIDGHYMTDAHYRLGP 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1326533 1328637 - CmaCh09G003220.1 Cma09g00322 300327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00322 371 SUPERFAMILY Homeodomain-like 274 350 IPR009057 -
Cma09g00322 371 Pfam KNOX2 domain 165 210 IPR005541 GO:0003677|GO:0005634
Cma09g00322 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Cma09g00322 371 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 363 - -
Cma09g00322 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Cma09g00322 371 SMART KNOX2_2 160 211 IPR005541 GO:0003677|GO:0005634
Cma09g00322 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Cma09g00322 371 SMART KNOX1_2 109 153 IPR005540 GO:0003677|GO:0005634
Cma09g00322 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Cma09g00322 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Cma09g00322 371 Pfam KNOX1 domain 110 152 IPR005540 GO:0003677|GO:0005634
Cma09g00322 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Cma09g00322 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Cma09g00322 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 363 - -
Cma09g00322 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Cma09g00322 371 Gene3D - 278 340 - -
Cma09g00322 371 MobiDBLite consensus disorder prediction 220 248 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00114 Cma09g00322 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00553 Cma-Chr3:5146944 Cma09g00322 Cma-Chr9:1326533 5.25E-82 dispersed
Cma04g01746 Cma-Chr4:8772054 Cma09g00322 Cma-Chr9:1326533 1.96E-85 dispersed
Cma07g00329 Cma-Chr7:1431763 Cma09g00322 Cma-Chr9:1326533 1.74E-88 dispersed
Cma09g00322 Cma-Chr9:1326533 Cma11g00090 Cma-Chr11:437936 1.15E-77 dispersed
Cma01g01765 Cma-Chr1:11858719 Cma09g00322 Cma-Chr9:1326533 0 wgd
Cma12g00621 Cma-Chr12:3272455 Cma09g00322 Cma-Chr9:1326533 4.03E-120 wgd
Cma05g00114 Cma-Chr5:493551 Cma09g00322 Cma-Chr9:1326533 3.62E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35603 PF03791 KNOX2 4.20E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00322 - - csv:101213104 595.504