Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00326 | ATGATCGGCGAACAATCTAGATTCACTCAAGCCATTCAAGTTCCCCCCTGGGACCCACACGAAGACCACCATAGCATCGGAATTTCCTCGCCGGTCTTCATTCACGGTGGCCTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTATCTGCCCTCGGCGGCGGATTCCACCGCGGCGGAAGAAGCGGTGGATGGATTTTCCTGCGACCATTTCCGTATGTTCGAGTTCAAAATCCGGAGATGTGCACGTGGGAGATCGCACGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGACGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCCGAGTTTCGGAAAGGAAATTGCAAAAAAGGGGATTCTTGCGATCTCGCTCATGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGGTATAGGACTCAGCCTTGTAAAGACGGACTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCATTTGCCGGAACAGCTCCGGGTTCTGCCACAGCAGAGCCCGAGAACTCCGGTTTCGGCCGATTCAGTAGATGGGTCCCCTCGAATTTCACTCGCATTCGATTCCTATTTCGCCAAAGGCTCACTTGTGACCTCACCCACTTCAATTATATCAATGCCGCCGGTCTCTCCACCGTCGGATTCTCCCCCTATGTCGCCGAATTGCCCCCAACTCGGCGGTGGGTCATTTAATTCAATGACTAAACTGGCTTCGTCTCATCTTAAAATAGGGAAATCAAAGGCAACCCCTCATTGGGGGATTCAATTAGGACAAAATCTGCGCTCTCCCTCCGGCTCTGGTTTCTATAGCCTACCGTCAACTCCGACGACCGGAAAGTACGAATTGTGGGGGAAGAGTTACGAGGAAGAACCCGCAATGGAGAGAGTGGAATCAGGGAGAGACCTGAGAGCCAAAATGTATGCAAAACTCAGCAAAGACAACTCCGTGAAAGAGGCGGCGGATTCGACGTCGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTAA | 1050 | 53.33 | MIGEQSRFTQAIQVPPWDPHEDHHSIGISSPVFIHGGLDSFIDSFSAIHRYLPSAADSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPMSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLRSPSGSGFYSLPSTPTTGKYELWGKSYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTSTPDVGWVSELLM | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1342960 | 1344009 | + | CmaCh09G003260.1 | Cma09g00326 | 300331 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00326 | 349 | Gene3D | - | 109 | 180 | - | - | |
Cma09g00326 | 349 | ProSiteProfiles | Zinc finger C3H1-type profile. | 113 | 139 | IPR000571 | GO:0046872 | |
Cma09g00326 | 349 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 348 | IPR045234 | - | |
Cma09g00326 | 349 | SMART | c3hfinal6 | 112 | 138 | IPR000571 | GO:0046872 | |
Cma09g00326 | 349 | SMART | c3hfinal6 | 147 | 170 | IPR000571 | GO:0046872 | |
Cma09g00326 | 349 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 348 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00112 | Cma09g00326 | CCT | |
Cma01g01767 | Cma09g00326 | CCT | |
Cma05g00112 | Cma09g00326 | ECH | |
Cma01g01767 | Cma09g00326 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00326 | Cma-Chr9:1342960 | Cma10g00690 | Cma-Chr10:3123164 | 9.21E-108 | dispersed | |
Cma01g01767 | Cma-Chr1:11875855 | Cma09g00326 | Cma-Chr9:1342960 | 1.24E-171 | wgd | |
Cma12g00622 | Cma-Chr12:3290026 | Cma09g00326 | Cma-Chr9:1342960 | 3.06E-90 | wgd | |
Cma05g00112 | Cma-Chr5:487440 | Cma09g00326 | Cma-Chr9:1342960 | 4.79E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35604 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00326 | - | - | cpep:111797621 | 685.256 |