Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00326 ATGATCGGCGAACAATCTAGATTCACTCAAGCCATTCAAGTTCCCCCCTGGGACCCACACGAAGACCACCATAGCATCGGAATTTCCTCGCCGGTCTTCATTCACGGTGGCCTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTATCTGCCCTCGGCGGCGGATTCCACCGCGGCGGAAGAAGCGGTGGATGGATTTTCCTGCGACCATTTCCGTATGTTCGAGTTCAAAATCCGGAGATGTGCACGTGGGAGATCGCACGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGACGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCCGAGTTTCGGAAAGGAAATTGCAAAAAAGGGGATTCTTGCGATCTCGCTCATGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGGTATAGGACTCAGCCTTGTAAAGACGGACTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCATTTGCCGGAACAGCTCCGGGTTCTGCCACAGCAGAGCCCGAGAACTCCGGTTTCGGCCGATTCAGTAGATGGGTCCCCTCGAATTTCACTCGCATTCGATTCCTATTTCGCCAAAGGCTCACTTGTGACCTCACCCACTTCAATTATATCAATGCCGCCGGTCTCTCCACCGTCGGATTCTCCCCCTATGTCGCCGAATTGCCCCCAACTCGGCGGTGGGTCATTTAATTCAATGACTAAACTGGCTTCGTCTCATCTTAAAATAGGGAAATCAAAGGCAACCCCTCATTGGGGGATTCAATTAGGACAAAATCTGCGCTCTCCCTCCGGCTCTGGTTTCTATAGCCTACCGTCAACTCCGACGACCGGAAAGTACGAATTGTGGGGGAAGAGTTACGAGGAAGAACCCGCAATGGAGAGAGTGGAATCAGGGAGAGACCTGAGAGCCAAAATGTATGCAAAACTCAGCAAAGACAACTCCGTGAAAGAGGCGGCGGATTCGACGTCGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTAA 1050 53.33 MIGEQSRFTQAIQVPPWDPHEDHHSIGISSPVFIHGGLDSFIDSFSAIHRYLPSAADSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPMSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLRSPSGSGFYSLPSTPTTGKYELWGKSYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTSTPDVGWVSELLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1342960 1344009 + CmaCh09G003260.1 Cma09g00326 300331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00326 349 Gene3D - 109 180 - -
Cma09g00326 349 ProSiteProfiles Zinc finger C3H1-type profile. 113 139 IPR000571 GO:0046872
Cma09g00326 349 PANTHER UNKEMPT FAMILY MEMBER 8 348 IPR045234 -
Cma09g00326 349 SMART c3hfinal6 112 138 IPR000571 GO:0046872
Cma09g00326 349 SMART c3hfinal6 147 170 IPR000571 GO:0046872
Cma09g00326 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 348 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00112 Cma09g00326 CCT
Cma01g01767 Cma09g00326 CCT
Cma05g00112 Cma09g00326 ECH
Cma01g01767 Cma09g00326 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00326 Cma-Chr9:1342960 Cma10g00690 Cma-Chr10:3123164 9.21E-108 dispersed
Cma01g01767 Cma-Chr1:11875855 Cma09g00326 Cma-Chr9:1342960 1.24E-171 wgd
Cma12g00622 Cma-Chr12:3290026 Cma09g00326 Cma-Chr9:1342960 3.06E-90 wgd
Cma05g00112 Cma-Chr5:487440 Cma09g00326 Cma-Chr9:1342960 4.79E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35604 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00326 - - cpep:111797621 685.256