Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00335 ATGTCGAGAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGATTTAATGAGCACCAGCGATTGAACGATGCTCGACCTGTGACGCGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCATCTTCTTCTGGGTCATCCTCGTCTTTGTCTATGGCGGCTTCCACTACAATGGGGAGATTGGAGGCCGTTGAATCAGTCGTTGATCAGGTGACTTCTGGGGATGTGGGCGATGGGTGCGTGGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTACAATTGGCTATGGCGATTAGCGCTTCCGATCCTGATTCGAGACAGGACACTGAATCCGCTCAGATCGATGCCGCCAAGCGGATGAGTCTTGGCTGTTCGCCTTCAATCTCCGGCAGTCAAGCTCTTGCCGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTACGACTTATATGGCATTACTACAAATTCTAGCACCCGAGGAAAGATGCCACTGTTAGTCGATCTTAAAGAAATATGCGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATTCCGAGCTTCAACGTTTGGAAAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAGTATGGCTTCATTTTAAGTGGACTGGTTCAAAAGATCGCTGATCTAGTCGTGGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAAATGCGTAGTTCTCTAAACACTATTATTCTACCACTCGGACGTCTTGATATTGGACTTGCACGTCATCGAGCTTTGCTTTTCAAGGTACTAGCTGATAGGATAAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACAGGTACCGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCTGTCAATTTTCGAATTATAGCTTTGATAGGAGGCCTGCAGATGTTATAGAAATTCCTGAAGATACGACAGTGTTACAAAATCAAGGATCTGAAGCGGTGTTGATGGCATCTACTCAAGATGAAGTAGCAAATATTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAACATTAGGAGCTTCATTGAAGAAATTCAAGCTGGGAGTTCTGACTATGATTTTGGGAAGCTTCTAGAATTAGAAAGCAGCGCGTGTGAAAATTCATCAGGTGCATGTGATCAGTCCGCATCTGCACAAAAGAAGAAAGTGAAAAAAGTGTCGAAGTATGTCATAAATGCTGCAAAGAACCCAGAGTTCGCTCAGAAATTGCATGCTGTCTTGTTAGAAAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATGGACTCCCAGGGTAATGGTGAAAGCAAAGCAACTTTCCAAATGTATCCAATCGATGGAAAAGGCGTAGACGTTGGGCTTCAGTGCCACCCTTATATTTTAGCAAGCCACAGACAGTCTTCTGCTACTTCTACTGAATCAGAGTTTTTGAACAATGTTGTCCATGGAAATAAGCAGAAAGTGTCTGCTGAGGGATCATCTGAAGAACAAACACCCGAGGCAAATGCAAACAAGCACAGCATATTTTGGCCCCACAATATGGAAAACAACAGATTTGTGTTCGTCAATGTTAATGGAGAAACAGGCAAATTGGCTGATGTTAATGGAACTTTTCATCGTGAGCACGTGGATGGTGTTTCGTTGGCATCTGATGCTGACTCTGATAAAAGACAATTAGGAAGTGTCTTCGTGAGTGAAGAAAGAGGATTTTTGAAAGATAAGAGCGGTGGAACTCTTCAGTGCTTCGATTTGCGTGAAAATCTGCATGAAAATTTGTTAGAAATTGATAATGGTAACCAGCGTGCTAGTGATGTCCGCAGTGAGACAATTGACCCAATATTAGGTGAGGTTGCAGAATGGGAAATCCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATTGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGACCAAGATTTGTCTGGTGCTGCTTTAGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTCGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCACATTTCTCTATCCTTACAGAGTTTCTACCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAACTCTCAATTCGATGAAAGGAGACGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTCCATAGAGATCTAAAATCTCCCAATCTGCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTCGGTTTGTCGCGTGTCAAGCAGAACACATTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCGCCAGAAGTTCTAAGGAATGAACCAGCCAACGAGAAGTGCGATGTGTACAGTTTTGGTGTGATACTGTGGGAGTTGACGACATGCTGCATACCATGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGACTGGAGGTTCCAGAAAATGTTGATCCTGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGAACTCGCAATTGAGGCCGTCGTTCTCTCAGCTTATTACTCGACTGCGATGCCTTCAACGGCTTGTTCAAGAAACAAACTCCGGGAATCAAATGTCGGAGTGA 2913 43.63 MSRMKHLLRKLHIGGGFNEHQRLNDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMAASTTMGRLEAVESVVDQVTSGDVGDGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSISGSQALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITTNSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDSELQRLERQAYNIFMECRVSEYGFILSGLVQKIADLVVARMGGPVGDAEEMLRRWTLRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYSFDRRPADVIEIPEDTTVLQNQGSEAVLMASTQDEVANICNLISKEASDLDAQSKENIRSFIEEIQAGSSDYDFGKLLELESSACENSSGACDQSASAQKKKVKKVSKYVINAAKNPEFAQKLHAVLLESGASPPADLFSDMDSQGNGESKATFQMYPIDGKGVDVGLQCHPYILASHRQSSATSTESEFLNNVVHGNKQKVSAEGSSEEQTPEANANKHSIFWPHNMENNRFVFVNVNGETGKLADVNGTFHREHVDGVSLASDADSDKRQLGSVFVSEERGFLKDKSGGTLQCFDLRENLHENLLEIDNGNQRASDVRSETIDPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQFDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCCIPWKGLNPMQVVGAVGFQNRRLEVPENVDPAVAQIICDCWQTNSQLRPSFSQLITRLRCLQRLVQETNSGNQMSE 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1377586 1385367 - CmaCh09G003350.1 Cma09g00335 300340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00335 970 CDD STKc_MAP3K-like 706 952 - -
Cma09g00335 970 MobiDBLite consensus disorder prediction 13 62 - -
Cma09g00335 970 Gene3D Phosphorylase Kinase; domain 1 693 777 - -
Cma09g00335 970 SUPERFAMILY Protein kinase-like (PK-like) 682 950 IPR011009 -
Cma09g00335 970 PRINTS Tyrosine kinase catalytic domain signature 774 787 IPR001245 GO:0004672|GO:0006468
Cma09g00335 970 PRINTS Tyrosine kinase catalytic domain signature 813 831 IPR001245 GO:0004672|GO:0006468
Cma09g00335 970 PRINTS Tyrosine kinase catalytic domain signature 860 870 IPR001245 GO:0004672|GO:0006468
Cma09g00335 970 PRINTS Tyrosine kinase catalytic domain signature 879 901 IPR001245 GO:0004672|GO:0006468
Cma09g00335 970 PRINTS Tyrosine kinase catalytic domain signature 923 945 IPR001245 GO:0004672|GO:0006468
Cma09g00335 970 ProSiteProfiles Protein kinase domain profile. 700 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00335 970 PANTHER SERINE-THREONINE PROTEIN KINASE 82 965 - -
Cma09g00335 970 SMART serkin_6 700 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00335 970 MobiDBLite consensus disorder prediction 44 62 - -
Cma09g00335 970 Gene3D Transferase(Phosphotransferase) domain 1 779 965 - -
Cma09g00335 970 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524
Cma09g00335 970 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 82 965 - -
Cma09g00335 970 Pfam Protein tyrosine and serine/threonine kinase 700 952 IPR001245 GO:0004672|GO:0006468
Cma09g00335 970 Pfam Ethylene-responsive protein kinase Le-CTR1 143 347 - -
Cma09g00335 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00083 Cma-Chr2:401409 Cma09g00335 Cma-Chr9:1377586 2.42E-77 dispersed
Cma09g00335 Cma-Chr9:1377586 Cma18g00067 Cma-Chr18:280844 1.15E-78 dispersed
Cma20g00216 Cma-Chr20:1031349 Cma09g00335 Cma-Chr9:1377586 1.09E-79 dispersed
Cma10g01052 Cma-Chr10:6473971 Cma09g00335 Cma-Chr9:1377586 8.39E-68 transposed
Cma11g00994 Cma-Chr11:5353144 Cma09g00335 Cma-Chr9:1377586 2.91E-69 transposed
Cma01g01739 Cma-Chr1:11761896 Cma09g00335 Cma-Chr9:1377586 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68785 PF07714 PK_Tyr_Ser-Thr 1.60E-64 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00335 K04424 - csv:101214554 1650.57