Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00342 ATGGATGGTTTTTTCCGAACAGTTGTGGCGAGTGTGCCTGTGGGAGTGGGTGCACTATTGTTCACGACGTTGTGCGTCGTGGGAGGGGGGTTTGTTTATTTCTATGGACCGTACTGGGGAGTGAGAAGGGTGCCTGGTCCACCAGCTATTCCGCTGGTTGGACACCTTCCCTTGCTTGCTAAGTACGGCCCAGACGTTTTCTCTGTCCTCGCTTCCCAATATGGCCCTATCTTCAGGTTCCATATGGGTAGGCAGCCATTGATAATTATAGCAGACCCTGAGCTTTGTAAAGAAGTTGGTATCAAGAAATTCAAGGACATCCCAAATAGAAGTGTCCCTTCTCCAATATCAGCTTCCCCGCTTCATCAGAAAGGTCTTTTCTTCACAAGGGATGCAAGATGGTCGACAATGCGAAACACTATACTATCGGTCTATCAGCCCTCTCATCTAACGAGACTAATACCTACTATGCAATCAATCATTGAAACTGCCACTCAAAATCTCCATTCCTCTGTCGAGGAAGACATCCCTTTCTCCAATCTCTCCCTCAAATTGACCACCGATGTAATTGGAACAGCAGCCTTCGGTGTCAACTTTGGGCTCTCTAATCCACAAGCAACCAAAACTTGTGGTACCAATGGCCATGACAGCAAAAATGATGAAGTTTCAGACTTCATCAATCAACATATCTACTCCACAACGCAGCTCAAGATGGATTTATCGGGTTCCTTCTCAATCATTTTGGGACTTCTTGTTCCTATACTCCAAGAACCATTTAGACAAATCCTGAAGAGAATACCATCCACCATGGACTGGAAAGTTGACCGGACAAATCAGAAGTTAAGTGGTCGGCTTAATGAGATTGTGGACAAGAGAATGAAATGTAACGATCGAAGTTCAAAAGACTTCTTATCTCTCATTTTGAGAGCAAGAGAGTCAGAGACGGTATCAAAGAATGTCTTCTCTCCAGACTACATCAGCGCAGTCACGTACGAACACCTACTTGCTGGGTCAGCTACTACAGCATTCACGTTGTCTTCTATTGTATATTTAGTTGCTGGACATCCAGAAGTCGAGAAGAAGTTGCTAGAAGAGATTGACAACTATGGTCCATCAGATCAGATACCAACAGCTAATGATCTTCAACAAAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGGTTCTACACTGTTTCCCCTCTAGTAGCTAGGGAGACATCTAAAGACGTGGAGATTGGTGGATATCTTCTTCCCAAGGGAACATGGGTTTGGTTAGCACTTGGAGTTCTTGCCAAGGATCCAAAGAATTTTCCAGAACCTGATAACTTTAAACCCGAGAGGTTTGATCCAGATGCAGAAGAGGAGAAACAAAGACACCCCTATGCCTTAATCCCGTTCGGAATTGGTCCTCGAGCATGTATCGGTCAGAAGTTCGCCCTTCAGGAATTGAAGCTCACTTTGATTCATTTGTATAGGAAGTTTGCATTTAGGCATTCCCTCTCCATGGAACATCCTCTTGAACTTGAGTATGGTGTCATTCTCAACTTCAAGAATGGTGTCAAGCTCAGAGTGATTAACCGTAAATAG 1596 44.17 MDGFFRTVVASVPVGVGALLFTTLCVVGGGFVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQPSHLTRLIPTMQSIIETATQNLHSSVEEDIPFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCGTNGHDSKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPILQEPFRQILKRIPSTMDWKVDRTNQKLSGRLNEIVDKRMKCNDRSSKDFLSLILRARESETVSKNVFSPDYISAVTYEHLLAGSATTAFTLSSIVYLVAGHPEVEKKLLEEIDNYGPSDQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPDNFKPERFDPDAEEEKQRHPYALIPFGIGPRACIGQKFALQELKLTLIHLYRKFAFRHSLSMEHPLELEYGVILNFKNGVKLRVINRK 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1407434 1411966 + CmaCh09G003420.1 Cma09g00342 300347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00342 531 PRINTS P450 superfamily signature 336 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS P450 superfamily signature 390 401 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 Pfam Cytochrome P450 45 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 SUPERFAMILY Cytochrome P450 37 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS E-class P450 group I signature 325 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS E-class P450 group I signature 345 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS E-class P450 group I signature 389 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS E-class P450 group I signature 429 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PANTHER THROMBOXANE-A SYNTHASE 14 530 - -
Cma09g00342 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Cma09g00342 531 Gene3D Cytochrome P450 33 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00342 531 PANTHER CYTOCHROME P450 FAMILY PROTEIN 14 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00342 Cma-Chr9:1407434 Cma11g01080 Cma-Chr11:5919489 6.68E-37 dispersed
Cma09g00342 Cma-Chr9:1407434 Cma12g01226 Cma-Chr12:9549605 3.02E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00342 K20771 - csv:101209772 991.104