Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00343 ATGGGGGGTTCTGGGAAATGGAGGAAGGTCTTTACAGGACAGAGGAAGTCTGAGAAGGACGACAACGAGAAGTTGTGTAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGTATGGAAGGGTTATAAAGGGGCACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGCCTGATTCTTTTACGGCCGCCGTCGCCGCCGTCCTCCGTGCTCCTCCCAAGAATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGAGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTATTACACTGAGGTGCATGCAGGCTCTGGTTAGAATCCAAGCTCGTGTCCGAGCACGTCATGTGAGGATGTCGGTTGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCCTAAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACAATGGAAGATATCAAAGCTAAGTTACAAATGAAGCAATATGGAGCATTTAAGAGGGAAAGAGCAATTGCTTACTCTCTTGTTCAGAAGCAATTGAAGGCAACACCAAACTCAACTTCACAAATAAATGCATCGATTTACGCTCTTAAGAGTTCCGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGTTAAGCCATGGGAGACAATGTTGAAAGAACAATCTCGCACTGATTCCGTTGAGGTCACTCCACCACCTTCAAAGAAATGTATAGAGTCTATTGTACCTAAACATTCCATAGTTTCTGAACCAAGTTTGGTGAAGATTCGGAGAAACAATGTATCCACTAGGATATCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCCGGTACGATGAGAGCTCTGTTTCATCTTCGATCTGCACGTCGACAACTCCTGCATCGGGGAATGTTTTCTCAACCATTGAAAGACCTGAGAATAGCAGTTACAGTAGGCCAAGTTACATGAACCCTACAGAGTCAACGAAGGTGAAGCAGAAAACAAACAGTCACTTATCGCATCGAGTTCAAAGGCAGTCCATGGATGAGTATCAGTTCCTTCAGAAGTCAGCAGGTTTCTCTAATGGGGACTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTTAAGCCATTCATGCTGTCTACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 46.86 MGGSGKWRKVFTGQRKSEKDDNEKLCSKTKKWRLWRSPSGDLSSVWKGYKGAHKAASEGSDSPRAPDSFTAAVAAVLRAPPKNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAITLRCMQALVRIQARVRARHVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTMEDIKAKLQMKQYGAFKRERAIAYSLVQKQLKATPNSTSQINASIYALKSSEFDKNNWGWSWLERWMAVKPWETMLKEQSRTDSVEVTPPPSKKCIESIVPKHSIVSEPSLVKIRRNNVSTRISAKPPSSGQARSCSSPSSDFRYDESSVSSSICTSTTPASGNVFSTIERPENSSYSRPSYMNPTESTKVKQKTNSHLSHRVQRQSMDEYQFLQKSAGFSNGDSKSSAGSDSSVNPFKPFMLSTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1410126 1412352 - CmaCh09G003430.1 Cma09g00343 300348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00343 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Cma09g00343 445 MobiDBLite consensus disorder prediction 389 429 - -
Cma09g00343 445 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Cma09g00343 445 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Cma09g00343 445 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Cma09g00343 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Cma09g00343 445 MobiDBLite consensus disorder prediction 309 382 - -
Cma09g00343 445 MobiDBLite consensus disorder prediction 1 23 - -
Cma09g00343 445 MobiDBLite consensus disorder prediction 309 445 - -
Cma09g00343 445 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Cma09g00343 445 SMART iq_5 111 132 IPR000048 GO:0005515
Cma09g00343 445 SMART iq_5 88 110 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01954 Cma-Chr1:12639396 Cma09g00343 Cma-Chr9:1410126 7.41E-21 dispersed
Cma05g00294 Cma-Chr5:1268439 Cma09g00343 Cma-Chr9:1410126 2.24E-20 dispersed
Cma09g00343 Cma-Chr9:1410126 Cma10g00857 Cma-Chr10:4163007 1.17E-61 dispersed
Cma12g00418 Cma-Chr12:2168275 Cma09g00343 Cma-Chr9:1410126 1.49E-18 dispersed
Cma13g00933 Cma-Chr13:7387045 Cma09g00343 Cma-Chr9:1410126 2.43E-22 dispersed
Cma18g00123 Cma-Chr18:600823 Cma09g00343 Cma-Chr9:1410126 4.71E-22 dispersed
Cma01g01729 Cma-Chr1:11717258 Cma09g00343 Cma-Chr9:1410126 0 wgd
Cma17g00716 Cma-Chr17:5896515 Cma09g00343 Cma-Chr9:1410126 2.42E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00343 - - csv:101210019 758.444