Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00355 ATGGATCTCAGAGTCATGGGCTTGGACTCCCCACTCTTCTCCACCCTCCAGCACGTGATGGACTTCGCCGACGACGCCGACAAGTCTTTCAGCGCCCCGACCCGTACCTACGTACGGGACGCCAAGGCCATGGCAGCCACTCCGGCCGACGTCAAGGAGTACCCGAATTCCTATGTTTTTGTCGTCGACATGCCGGGGTTGAAGGTTGGTGACATCAAGGTTCAGGTAGAGGAAGACAATGTGCTACTGGTAAGTGGCGAGAGGAAGAGGGAGGAGGAGAAAGAAGGGGCCAAGTACGTAAGGATGGAGAGAAGAGTCGGCAAGTTTATGAGGAAATTTGTGTTGCCGGAAAATGCCAACACGGATGCCATTACGGCGGTTTGTCAGGACGGTGTGCTTACTGTGACTGTGCAAAAGTTGCCACCACCGGAGCCTAAGAAGCCCAAGATCGTTGAGGTCAAGGTCAATTGA 471 54.35 MDLRVMGLDSPLFSTLQHVMDFADDADKSFSAPTRTYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKVGDIKVQVEEDNVLLVSGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANTDAITAVCQDGVLTVTVQKLPPPEPKKPKIVEVKVN 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1467748 1468218 - CmaCh09G003550.1 Cma09g00355 300360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00355 156 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 155 - -
Cma09g00355 156 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 156 IPR002068 -
Cma09g00355 156 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 155 - -
Cma09g00355 156 Gene3D - 9 154 IPR008978 -
Cma09g00355 156 Pfam Hsp20/alpha crystallin family 50 154 IPR002068 -
Cma09g00355 156 SUPERFAMILY HSP20-like chaperones 13 150 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00355 K13993 HSP20; HSP20 family protein - csv:101212955 235.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01714 Cma-Chr1:11648309 Cma09g00355 Cma-Chr9:1467748 6.25E-84 dispersed
Cma09g00355 Cma-Chr9:1467748 Cma04g01152 Cma-Chr4:5895345 9.87E-31 dispersed
Cma14g01206 Cma-Chr14:9650839 Cma09g00355 Cma-Chr9:1467748 9.35E-23 transposed
Cma01g01713 Cma-Chr1:11647579 Cma09g00355 Cma-Chr9:1467748 9.97E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g127 . Blo12g01022 . . . Bpe02g00501 . . . . . . Car09g00304 . . . Cpe06g00252 . . . . . . . Cla05g01856 Cam05g1981 Cec05g1994 Cco05g2052 Clacu05g1973 Cmu05g1855 Cre05g1980 . . . . . . . . . . . . Bpe14g00274 . . . . . Cmo09g00355 Cma09g00355 . . . . Cpe02g00279 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00355 Cma_Chr09 FPKM 2.722445 2.82807 74.398666 59.178932 48.152828 50.394096 37.200676 902.870239 1004.840881 845.686096