Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00357 ATGAGCCTAGATGCCGCTGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGGTTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACCGCCCTTTATCCTATTGTTGTTTTGAAAACTCGACTTCAGGTTTCTTCTACCAAGTTATCCTGCTTTAAAATGTCATATTCTATCATGCGCCATGAAGGCTTAAGAGGATTTTACAGAGGGTTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGTGTTGGAAGTGCAACTATTAGGCTAGGTCTTTCAGACACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCTGCCATGGCTGCTCAATTGGTCTGGACTCCAGTAGATGTTGTAAGCCAACGACTAATGGTTCAGGGAAGCTGCATCAATGCTAAGAACAGTGTTTCTAATCTTAATTCTTGCGTCTATAAAAACGGTATCGACGCGTTTAGAAAGATCATTTATGCTGATGGCTTGCGAGGATTGTATAGGGGATTTGGGATTTCAATATTGACATATGCTCCATCAAATGCAGTTTGGTGGGCTTCTTACTCTGTAGCTCATAGATTCATTTGGAGTGGTCTAAGCTACTACACAAGTAAGAAGGATGAGAGTTGTATAAGTGGCTATGGTTTTAAAGCTGATTCTAAGGCAACAGTGGCAGTTCAGGGGTTGAGTGCAACCTTTGCCAGTGGGGTTTGTGCTATGATAACAATGCCATTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGCCTGAGACGCCCTCTAACGGCGTTGCAGACCATAAGGAACTTGGTGAAGGAAGGCGGTCTGAATGCTTGTTATAGAGGGCTTGGACCGAGGTGGGCTTCGATGGCTATGTCTGCAACCACCATGATCACAACCTATGAGTTTCTCAAACGGCTATCTGCTAAGAACCAAGATCGTTTGAGCTGA 1047 43.65 MSLDAAEDESTSEIHIPAEVDWDMLDKSKFFFLGAALFSGVSTALYPIVVLKTRLQVSSTKLSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIRLGLSDTTAMAIANAAAGLSSAMAAQLVWTPVDVVSQRLMVQGSCINAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWASYSVAHRFIWSGLSYYTSKKDESCISGYGFKADSKATVAVQGLSATFASGVCAMITMPLDTIKTRLQVLDGEENGLRRPLTALQTIRNLVKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSAKNQDRLS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1469887 1470933 + CmaCh09G003570.1 Cma09g00357 300362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00357 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 339 IPR018108 -
Cma09g00357 348 Pfam Mitochondrial carrier protein 36 107 IPR018108 -
Cma09g00357 348 Pfam Mitochondrial carrier protein 250 343 IPR018108 -
Cma09g00357 348 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Cma09g00357 348 Gene3D Mitochondrial carrier domain 30 347 IPR023395 -
Cma09g00357 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 221 IPR018108 -
Cma09g00357 348 SUPERFAMILY Mitochondrial carrier 23 336 IPR023395 -
Cma09g00357 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 346 - -
Cma09g00357 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 346 - -
Cma09g00357 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cma09g00357 348 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085
Cma09g00357 348 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cma09g00357 348 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01712 Cma09g00357 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00787 Cma-Chr8:4743887 Cma09g00357 Cma-Chr9:1469887 4.49E-161 dispersed
Cma09g00357 Cma-Chr9:1469887 Cma15g00225 Cma-Chr15:1120065 2.54E-87 dispersed
Cma01g01712 Cma-Chr1:11645103 Cma09g00357 Cma-Chr9:1469887 0 wgd
Cma17g00701 Cma-Chr17:5800205 Cma09g00357 Cma-Chr9:1469887 2.17E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00357 K15121 - csv:101213436 607.446