Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00361 ATGAACAATGTGAGGAAGGAGAACAACCAGCAGAGTAGACCAAACCCATGGGTGTCTCAGAACTCATCGGAGGTGAATCTCCAACTTAGAGGAACCTCTCAATCTCGCAGATATTCTCCAAGCTTGTGCGACTGTGTAGGGATGGGATCAAACGTTTCAACCTCTAGACGACCACGCTCGTCTGAGATGCTGGAATTGAAGGTGGCAGAGTTGGAGAGGGAGCTGCTGAAGCAGAAAGAAATCCAGCTTATGTTTAAGAAGAGAATGGATAGAGCACAAGATTCTCTCAAATGCTTTCTTGAGAAAGCCCAGGACCATGGATTCTTGCACCTCATAATTGGGAACAGAGACAATGTGGATGGCGATGGCAGCCCAAATTGCATTCAAAGCGCCGGTTCCAGCCCTGCAGTACCCTCCCCAAGCCACCCGTTTGCAGACCTACAGCCACTCATCGAGCAGGCCAAGCTTCATGGATGGTACATCGAGCCACATGAGATTGAACTGAGGGAGAAGATAGGGCAAGGGACAACAGCTAACATATACAAGGCAACCTGGCGGGGTCTTGACGTAGCAGTGAAATGCCTAAACCAAGACTTCTTCTGCTCGAACGAGTGCGGAGTATCTTACTTCGCACAGGAGCTAGAGACGCTCTGTAGACAACGCCATCGGTTCGTGCTGCAACTGATGGGGGCATGTCTCCAGCCACCGGGTTGCGGGTGGGTCGTAACGGAGTGTTTAAGGATGACATTGCAAGAGTGGCTGCACGGGCCAGGGAAAAGGCAGATAGAGAGGGCAATTCCTCTGCCTCCATTTCGAGAGAGGTTGTTGAAGGCACTTGAAATATCACAAGGGATGCAGTATCTTCATGAACAGAAGCCTAGAGTCATCCATCGTGATTTGAAGCCCAGCAACATTTTCTTGGACGATGCTTTGCATGTCAGAGTTGCTGATTTTGGCCATGCCCGCTTCCTCCACGACAGAGAGATGGCTCTCACCGGCGAAACAGGAACCTACGTTTATATGGCACCAGAGGTGATTCGATGCGAGCCTTACACAGAAAAAAGCGATGTTTATAGCTTTGGTATCATCTTGAACGAACTTATAATAGGAAAATATCCTTATATTGAGATTGATTATTCTCCCTTCAAGATTGCCATGGAAGTTGGAGAAGGCAAGCTGAGACCGGAGCTTCCGGTGGACGAGAATGGGGAGCTAAAAGAGCTGTTAGATCTGATATGTGCTTGTTGGAATGGAAATGCTGCTGATAGACCATCGTTTGCAACCATAACGGGTCGTTTGAGAAGTATTCAAAACTAA 1317 48.44 MNNVRKENNQQSRPNPWVSQNSSEVNLQLRGTSQSRRYSPSLCDCVGMGSNVSTSRRPRSSEMLELKVAELERELLKQKEIQLMFKKRMDRAQDSLKCFLEKAQDHGFLHLIIGNRDNVDGDGSPNCIQSAGSSPAVPSPSHPFADLQPLIEQAKLHGWYIEPHEIELREKIGQGTTANIYKATWRGLDVAVKCLNQDFFCSNECGVSYFAQELETLCRQRHRFVLQLMGACLQPPGCGWVVTECLRMTLQEWLHGPGKRQIERAIPLPPFRERLLKALEISQGMQYLHEQKPRVIHRDLKPSNIFLDDALHVRVADFGHARFLHDREMALTGETGTYVYMAPEVIRCEPYTEKSDVYSFGIILNELIIGKYPYIEIDYSPFKIAMEVGEGKLRPELPVDENGELKELLDLICACWNGNAADRPSFATITGRLRSIQN 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1485295 1488981 + CmaCh09G003610.1 Cma09g00361 300366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00361 438 ProSitePatterns Protein kinases ATP-binding region signature. 172 193 IPR017441 GO:0005524
Cma09g00361 438 ProSiteProfiles Protein kinase domain profile. 166 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00361 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Cma09g00361 438 SUPERFAMILY Protein kinase-like (PK-like) 145 430 IPR011009 -
Cma09g00361 438 SMART serkin_6 166 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00361 438 Coils Coil 61 81 - -
Cma09g00361 438 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 37 438 - -
Cma09g00361 438 Gene3D Transferase(Phosphotransferase) domain 1 267 438 - -
Cma09g00361 438 MobiDBLite consensus disorder prediction 1 23 - -
Cma09g00361 438 Pfam Protein tyrosine and serine/threonine kinase 166 432 IPR001245 GO:0004672|GO:0006468
Cma09g00361 438 Gene3D Phosphorylase Kinase; domain 1 149 246 - -
Cma09g00361 438 PANTHER OS09G0443600 PROTEIN 37 438 - -
Cma09g00361 438 CDD STKc_MAP3K-like 172 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00361 - - - csv:101216481 778.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00361 Cma-Chr9:1485295 Cma01g01992 Cma-Chr1:12796667 6.18E-49 dispersed
Cma09g00361 Cma-Chr9:1485295 Cma06g00139 Cma-Chr6:708474 2.61E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g143 . . . . . Bpe02g00332 . . . . . . Car09g00308 . . . Cpe06g00255 . . . . . . . Cla05g01617 Cam05g1730 Cec05g1735 Cco05g1791 Clacu05g1719 Cmu05g1603 Cre05g1730 Cone4ag1692 . . . . . . . Blo17g00274 . . . Bpe14g00279 . . Bma02g00338 . . Cmo09g00582 Cma09g00361 . . . . . Bhi09g03092 . . . . . . . . . . . . . . . . Cme07g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010809 0 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68786 PF07714 PK_Tyr_Ser-Thr 9.00E-44 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00361 Cma_Chr09 FPKM 2.12397 1.619136 0.568542 0.987628 1.519957 1.279371 0.963429 2.633534 2.474542 2.399155