Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00363 AAAGAAAGAAAGAAAAAAAAAAAAAAAATTCCCACTTCCATTATTTATAGCCCTACGCCGGCGACGATGATTGCTTACCTGGAACCGTTTATACAGGACAACGATTCCCGCCGGCCCCACGACGGGTCATCTCTGTGCGAGGCTCTAGAGCTTCAACTACAAGGCGGCGTCAGCACCGACTCACGGGACACTGGTTTAGCCGGTAAGGATTTCGGGGGACTATATTCAATAACACCGTTGGCTTTGGTGAGACCAGCCGGCGCCGATGATGTGGCGAAGGTAGTGAAATCGGCTTTACAGTCGTCTAATCTGACGGTGGCGGCGAGGGGTAACGGCCATTCAATCAACGGCCAGGCGATGGCGGATCAAGGGCTGGTTGTGGACATGCGTGCGATGGAGGATCATTTCAGTATCGTTCCGATTAATGGACTGACCTACGCCGACGTATCGGGAGGGGCATTATGGGAAGACGTCTTGAAACGCTGCGTTTCGAGTTATGGATTGGCTCCCAGGTCTTGGACTGATTACCTTAGCTTAACCGTCGGCGGGACTTTGTCGAACGGCGGCGTTAGTGGCCAGGCCTTCAGGTACGGCCCACAAATTTCCAACGTGGCTGAATTAGAAGTCGTGACTGGAAAAGGCGATATTGTAATTTGTTCCGAAAATGAAAATTCGGAATTGTTTTTTAGCGTTCTCGGCGGTTTGGGTCAGTTTGGGATCATCACAAGAGCTCGTGTTTTGCTTCAGCCAGCGCCGGATATGGTGCGGTGGATTAGACTGGTATACGATGAGTTCGAAAGGTTCGCCGGCGATGCTGAATCCTTGGTACGGCGGTCGGAAGGCGACTCGTTTGATTACGTGGAAGGCTTCGTTTTTTCCAACAACGACGACCCATTGACAGGAAGATCCACAGTGCCGTTGGCCTCCGGTGCTGTCTTCGACTCATCTCATTTACCGGAAACCGCCGGTTCGGTTCTCTACTGTCTCGAGGTCGCCGTCCACTACCGGAACAACGACCAAGTCTCAACCGTCGACACGGACGTTGAGAGGTTGCTGAGCGGGCTCGGGTATGTGAAGGGGCTCAGATTCCAGGTGGACCTCAGCTACGTACAATTTTTGTCACGTGTGAAGCGTGCGGAGGAGGAAGCAATCGCCAACGGCGTTTGGGATGCTCCTCATCCTTGGCTTAACCTCTTCGTGTCGAAATCAGACATCGTCAATTTTGATCGTGCGGTCTTCAAGACCCTCCTAAAAAATGGAGTCGGTGGGCCCATGCTCGTCTATCCTCTTCTGCGTAGCAGGTGGGATTCTCGAACGTCAGTGGCATTACCAGAAGGTGAAGTGTTCTACCTAGTGGCATTACTACGATTCACTCCACCAAATTCGAGACCTGCATTGGTTGATAAGTTAGTGGAACAAAATCGAGAAATTGTCAATATATGTCATGTGAATTGCATCGACTTCAAGCTCTATTTGCCACACTACCATTCAGAAAAAGAGTGGAAGCTTCACTTTGGAAATCAATGGAGCAGATTTGTGGAGAGAAAAACATTGTTTGATCCAATGGCCATCCTTGCTCCACGTCAAAAGATCTTTGCTCGAGATTTCTTGATCTCGAAACTACAATTTTTAAAACAAAAAGCTTGA 1647 49.73 KERKKKKKKIPTSIIYSPTPATMIAYLEPFIQDNDSRRPHDGSSLCEALELQLQGGVSTDSRDTGLAGKDFGGLYSITPLALVRPAGADDVAKVVKSALQSSNLTVAARGNGHSINGQAMADQGLVVDMRAMEDHFSIVPINGLTYADVSGGALWEDVLKRCVSSYGLAPRSWTDYLSLTVGGTLSNGGVSGQAFRYGPQISNVAELEVVTGKGDIVICSENENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRLVYDEFERFAGDAESLVRRSEGDSFDYVEGFVFSNNDDPLTGRSTVPLASGAVFDSSHLPETAGSVLYCLEVAVHYRNNDQVSTVDTDVERLLSGLGYVKGLRFQVDLSYVQFLSRVKRAEEEAIANGVWDAPHPWLNLFVSKSDIVNFDRAVFKTLLKNGVGGPMLVYPLLRSRWDSRTSVALPEGEVFYLVALLRFTPPNSRPALVDKLVEQNREIVNICHVNCIDFKLYLPHYHSEKEWKLHFGNQWSRFVERKTLFDPMAILAPRQKIFARDFLISKLQFLKQKA 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1496454 1499825 + CmaCh09G003630.1 Cma09g00363 300368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00363 548 PANTHER GULONOLACTONE OXIDASE 32 535 - -
Cma09g00363 548 SUPERFAMILY FAD-linked oxidases, C-terminal domain 252 532 IPR016164 GO:0003824|GO:0050660
Cma09g00363 548 SUPERFAMILY FAD-binding/transporter-associated domain-like 54 250 IPR036318 GO:0050660
Cma09g00363 548 Gene3D - 255 491 IPR016170 -
Cma09g00363 548 Gene3D - 129 253 IPR016169 -
Cma09g00363 548 PANTHER CYTOKININ DEHYDROGENASE 7 32 535 - -
Cma09g00363 548 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 252 532 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cma09g00363 548 ProSiteProfiles PCMH-type FAD-binding domain profile. 75 251 IPR016166 GO:0071949
Cma09g00363 548 Pfam FAD binding domain 79 220 IPR006094 GO:0050660
Cma09g00363 548 Gene3D - 67 532 IPR016167 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00363 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - csv:101217899 933.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01702 Cma09g00363 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00363 Cma-Chr9:1496454 Cma12g00441 Cma-Chr12:2311487 3.62E-147 dispersed
Cma01g01702 Cma-Chr1:11591206 Cma09g00363 Cma-Chr9:1496454 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g160 Blo01g01447 Blo12g01030 Bda01g00639 Bda03g00126 Bpe02g01249 Bpe02g00507 Bma04g00113 Bma01g02195 . . Cma01g01702 . Car09g00311 . . . Cpe06g00257 . . . . . . . Cla05g01625 Cam05g1735 Cec05g1743 Cco05g1800 Clacu05g1725 Cmu05g1609 Cre05g1738 Cone4ag1698 Cone7ag1614 Cone17ag0943 Cone20ag0286 Lsi04g01389 . . . . . Bda01g01004 . . Bpe04g00111 . . Sed05g1792 Cmo01g01809 Cmo09g00362 Cma09g00363 . Car01g01320 . . Cpe02g00289 Bhi09g03084 Tan01g3470 Cmetu07g2288 . Hepe01g1915 Mch11g0450 . . . . . . . . . . . Cme07g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004654 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00363 Cma_Chr09 FPKM 8.69609 8.724056 3.044069 3.565498 9.03842 10.39095 8.407328 0.10871 0.0 0.0