Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00364 ATGACGAATTGGTGCTGCTTGTGCTTCACCGTTCCAGAAGAAGACGAAAGGGAAGAGGAACTGAAGAAGGAAGGTGAGATGAAACCCATGATGAGTGAGGGGGATTTTGAGAACCAGGATGACTCTGATCGCATTATGCGAAATGGCGATGATTCTGGTGGGAGTAACCCACTTGCGATTGCTGTTGACGGGCCCGACCGCCACGACGGTGATCGGCTTAGATTGTTTGAGGATATGGTCAGAGCAATGCACGATGACGGCGATGGTGGTGTTCATTGGGACCATGAGCTGCGCGGCGGTGGTGGGGCTGTCAATCCCTGGAACTTTTCTTTTGGAATTCTGCATCAGTCCGAGGGAGGAGAGAGCAGTAGCGCCTCGGCTTTGGCCTTGTCTTCTACGATGGAGACTTCTAATGAGGAACGCGATCGGGATGCCCACCATAAGCGCGCTAAAGTTCACTCCATGTTCATTGAGAGCTCATTTGCAACTTCATGGCCTTTGGGTGCTGGAAATCCTGCGAGAGATTTTGATTTTAGTAATGGATCATCTTCAAATATGACTAGGAACGAATATCTATGCCATGGTACTACATCAAGCAGAGTTGATGCCGACAAAGGCTTGGAATCTAGTTTTGATAGAGATGATGGGATAAATGAGAATGACACCTGTAAATCGGAAGGATTTGAAGTAAGGATGGATCTCACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCACGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAATTTGAGGATATGTGCGGAAGATATCCAAATGCCACTGAGGTCAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGGAGATACCTTTTTTCACGCCCTGGCTGAGTGCCATTTGTTGAAGAGCTTGACTGTCAATGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATGCGAGTATCTGTTAGATGTCCACAACTTAAAACATTGTCGTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAACTGCCCTCTTCTTCATGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGTTGCTATTCGCTCAGCCGCTATTTCATGCCCACAGTTGGAATCTCTTGATATGTCCAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTTCCTCGAACTGCCTGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGATTGACAATGCTGACAGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTAGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCCGTCTCTCTGGATCTTCCTCATTTGCAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGACTTGAGTTTACAGAGTGTTAAGTTATCATCCATAATGGTCTCTAATTGTCCATCACTTCACCGGATCAACATCACTTCCAATTTTCTTCAAAAGTTAGTGTTGAAGAAACAAGAGAGCTTGGCCAGATTGGTTTTGCAGTGCCCTAGTCTGCAAGATGTGGACCTCACAGACTGTGAATCACTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGCTGCCCTATGTTGAGATCGCTTGTTCTTGATAACTGCGAGAGTTTGACTGCTGTTCAATTCTGTAGCAGTTCTTTGGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCCCTTGAACTTCAATGTCCTAATCTTGAACAGGTTTCTCTAGATGGCTGTGATCATCTCGAGAGAGCATCGTTTTCCCCGGTTGGTCTGCGGTCATTAAACTTGGGAATCTGTCCCAAATTGAATGAGTTAAGACTTGAGGCCCCTTGTATGGATTTACTCGAGTTGAAAGGTTGTGGTGGATTGTCTGAGGCGGCCATCAATTGTCCTCGTCTAACATCATTGGATGCTTCCTTTTGTGGTCAACTGAAAGACGAGTGTTTGTCTGCAACGACTGCCTCATGTCCACAGATTGAGTCGTTAATACTGATGTCATGCCCTTCGGTTGGTTCAGAGGGTCTTTACTCTCTGCAATGTCTTCTGAAGTTGGTTGTGCTTGATTTATCATATACCTTTTTGATGAGCTTGCAGCCAGTCTTTGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTATCTGACTCATCGCTAGAGCCTCTTTATAAGGAAGGTGCTCTTCCAGCCCTTCAAGAGTTGGACTTATCTTACGGGACACTCTGTCAATCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACACTTAACTCATGTGAGCTTAAATGGATGTGTGAACATGCATGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCTTTGTCCAGCATCCCCATTCCTCTTGGTCAAGCCACTCTTGATGAGATTGAGGAACCAGTTGCACAGCCAAATCGTTTGTTACAGAATCTTAACTGTGTAGGCTGTCAGAATATTAGGAAGGTTCTCATTCCTCCAGCTGCACGTTGTTTCCATTTATCGTCATTAAACCTTTCCCTGTCTTCAAATCTCAAGGAAGTCGACGTTTCTTGTTACAACCTATGCTTTCTTAATTTGAGTAATTGTTGCTCTCTGGAAGTTTTGAAACTCGACTGCCCAAAGTTGACCAGTCTCTTTCTTCAGTCTTGCAACATCGAGGAAGAAGCGGTTGTAGCTGCAGTATCTAAATGTAGCATGCTCGAGACGTTGGATGTCCGCTTTTGTCCAAAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGACTAATTCTTCTCTTCCCTACAAAATTTTCCTCCCACCTGTTAATTCCGAGTTCGGGAGACGACCCAAGTTTCGCTTTATGTACATGGATGGTCTTGAATTCTGTCAGCTTCCATTTGCTTGGGCTGATTCAAATGTGACAGATAACCCTGCTGATAAACTAGTAGTCGTGCTTAACAAGAACAGAACTGCTCACAAATTACCTGCTCTAAAAGATAATCCTGGCTTGGCATGCCTTGCTCTTCAGTATATCAAGGCATACCAAGGGAAATGCGACGCGGTCGGAGGTCCCGACGGAATGAAGCCTCCAAATTCTGCATTTACTGAAACATTTGCTCCCAATTGTGGAGTTCTTGTCTCTTCTCTTGCTCCCATCACTGGGCGGTTGCTTGGTTGCCAGTCTAAATATGTTCATGCTCCTGAAGCATTTTCTGATGTTTTGATGCTGAATGAGAAGAGCTTGGAGATTCTCAACTACAAGAACAACACAGAAGTTGGAGCTGCTGTGACTGGCACTGATGGGGGCTCGCCCTACTTTTGGTGTGTGTTGTTCAGCAATGGCAGCCTCTCTAATAGCTTTGCCTTTGAGGGAGGTGTGGCTAAGTTAACGCGGCCTGGTTGCTACAGTGGGGCTAATGACCAATGCAGCAAAGCCAATAGCCAATTCTTAACCACACGTATGTTGCTATTAGCTTTGACATCTTTGGTTGCTATAACATATGCCTTTGGTTTATGA 3783 44.36 MTNWCCLCFTVPEEDEREEELKKEGEMKPMMSEGDFENQDDSDRIMRNGDDSGGSNPLAIAVDGPDRHDGDRLRLFEDMVRAMHDDGDGGVHWDHELRGGGGAVNPWNFSFGILHQSEGGESSSASALALSSTMETSNEERDRDAHHKRAKVHSMFIESSFATSWPLGAGNPARDFDFSNGSSSNMTRNEYLCHGTTSSRVDADKGLESSFDRDDGINENDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRNLEVLTLGRGQLGDTFFHALAECHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVMRVSVRCPQLKTLSLKRSNMAQAVLNCPLLHDLDIGSCHKLSDVAIRSAAISCPQLESLDMSNCSCVSDETLREISSNCLNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSSLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNFLQKLVLKKQESLARLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLRSLVLDNCESLTAVQFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELRLEAPCMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLQCLLKLVVLDLSYTFLMSLQPVFESCIQLKVLKLQACKYLSDSSLEPLYKEGALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSSIPIPLGQATLDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPKLTSLFLQSCNIEEEAVVAAVSKCSMLETLDVRFCPKFEADLQQSVSNMTNSSLPYKIFLPPVNSEFGRRPKFRFMYMDGLEFCQLPFAWADSNVTDNPADKLVVVLNKNRTAHKLPALKDNPGLACLALQYIKAYQGKCDAVGGPDGMKPPNSAFTETFAPNCGVLVSSLAPITGRLLGCQSKYVHAPEAFSDVLMLNEKSLEILNYKNNTEVGAAVTGTDGGSPYFWCVLFSNGSLSNSFAFEGGVAKLTRPGCYSGANDQCSKANSQFLTTRMLLLALTSLVAITYAFGL 1260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1502454 1512899 + CmaCh09G003640.1 Cma09g00364 300369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00364 1260 SUPERFAMILY L domain-like 334 697 - -
Cma09g00364 1260 MobiDBLite consensus disorder prediction 15 65 - -
Cma09g00364 1260 Pfam F-box-like 236 275 IPR001810 GO:0005515
Cma09g00364 1260 SUPERFAMILY L domain-like 714 1006 - -
Cma09g00364 1260 Gene3D Ribonuclease Inhibitor 883 1059 IPR032675 -
Cma09g00364 1260 Gene3D Ribonuclease Inhibitor 788 881 IPR032675 -
Cma09g00364 1260 Gene3D Ribonuclease Inhibitor 551 700 IPR032675 -
Cma09g00364 1260 Gene3D Ribonuclease Inhibitor 399 550 IPR032675 -
Cma09g00364 1260 MobiDBLite consensus disorder prediction 15 48 - -
Cma09g00364 1260 SMART fbox_2 234 274 IPR001810 GO:0005515
Cma09g00364 1260 SMART LRR_CC_2 848 879 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 966 990 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 747 772 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 458 478 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 795 820 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 406 431 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 525 550 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 479 504 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 616 654 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 658 688 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 991 1019 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 432 457 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 721 746 IPR006553 -
Cma09g00364 1260 SMART LRR_CC_2 588 613 IPR006553 -
Cma09g00364 1260 Gene3D - 229 271 - -
Cma09g00364 1260 PANTHER OS10G0396666 PROTEIN 136 991 - -
Cma09g00364 1260 SUPERFAMILY F-box domain 232 287 IPR036047 GO:0005515
Cma09g00364 1260 PANTHER OS10G0396666 PROTEIN 136 991 IPR044703 GO:0010252|GO:1905393
Cma09g00364 1260 Gene3D Ribonuclease Inhibitor 706 787 IPR032675 -
Cma09g00364 1260 MobiDBLite consensus disorder prediction 122 146 - -
Cma09g00364 1260 Gene3D Ribonuclease Inhibitor 272 398 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00364 - - - cmo:103493700 1773.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00963 Cma-Chr8:6032448 Cma09g00364 Cma-Chr9:1502454 3.31E-37 dispersed
Cma09g00364 Cma-Chr9:1502454 Cma17g00066 Cma-Chr17:303974 4.79E-39 dispersed
Cma09g00364 Cma-Chr9:1502454 Cma01g01702 Cma-Chr1:11591206 9.49E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g163 . . . . Bpe02g01560 . . . . . . . Car09g00314 . . . . . . . . . . . Cla05g01627 Cam05g1736 Cec05g1744 Cco05g1801 Clacu05g1727 Cmu05g1612 Cre05g1740 . . . . Lsi04g01386 . . . . . Bda01g01347 . . . . . Sed05g1795 . Cmo09g00363 Cma09g00364 . . . . . Bhi09g03082 Tan01g3472 Cmetu07g0807 . . Mch11g0452 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00364 Cma_Chr09 FPKM 19.36433 21.023792 20.62059 20.432953 20.553162 20.106861 20.786873 20.420872 18.176146 21.930492