Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00366 ATGGATAGAGGATATGACGTGGCAGCTGCAGTTCATACCGAAAATTTAGCCAAGAGCTTCCGGCGCCGGTCCGATGCTCTGATGGCGGCCGATTTAGCGCGGCTCTCTCTATGGCATCACCAGAGGCAGTTCTTTCACTCCGCCTCTAAATCTCAGGCTTCTTTGTTTGACTCTAGGCCTGGATTTCTCCCCATACGGCATCGTCCTCAGAGTTTAGTATGGAAACAGTATCCACGCCGTTTTGGAAGATGCTTGGGGCATCGTTTCGTTGTTTCGAATACTCTTGAGGCCGAACTTCGAGCTCAGAACACAGTGCTTCAACAGGAGCGGCGGGATGAGTCTTCTGTTCTTCTTGATGTCTCTGGAATGATGTGTGGTGCATGCGTCTCCCGAGTCAAATCCATTCTCTCGTCCGACGACCGAGTTGACTCTGTGGTGGTTAATATGTTGACTGAGACAGCAGCGATTCGGTTGAAATCGGATGAAGTTGGCGCGGAGGCTGGTTCTGCGGTGAATGTGGCGGAGAGTCTGGCGCGAAGACTGACGGATTGTGGCTTTCCAACGGTTTTGAGGAATTCGGAGGTTGGAGTGGCGGAGAATGTGAGAAAATGGAAGGAGATGGTTGAGAAGAAAAGAAAAATGCTGGTTAAGAGTAGGAATCGAGTGGCTATTGCTTGGACTTTGGTTGCCTTATGCTGTGGCTCACACGCATCGCATATCTTGCACACCTTTGGGATTCACATCCACCACGGACCAGTGATGGAGATACTTCATAACTCGTATGCGAAGGGTTGTTTTGCTTTGGTTGCTCTTTTAGGACCAGGACGAGAACTACTCTTTGACGGTCTGAGGGCATTCAGGAAGGGATCACCTAATATGAACTCTCTTGTGGGTTTTGGGGCAGTTGCTGCATTTATTATCAGTGCGGTCTCACTTCTTAATCCTGAGCTAGACTGGGATGCCTCATTTTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTTCTTGGGCGTTCTCTGGAGGAAAGAGCAAGGGTTAAGGCCTCTAGTGATATGAATGAGCTTTTATCGTTGATCTCTTCCCATTCACGACTTGTGATTACTCCATCAGAAGGCAATTCCTCTACAGATGATGTGCTTTGCTCGGATGCAATGTGCATTCAGGTGTCTACCGATGACATTCGGGTTGGAGACTCTGTTTTAGTTTTGCCTGGAGAGACTATTCCCGTGGATGGAAAGGTTCTTGCGGGAAGAAGTGTTGTAGATGAATCAATGCTTACTGGGGAATCTCTACCTGTATTTAAGGAAGCAGGCCTTATCGTCTCAGCTGGAACTGTGAACTGGGATGGCCCTTTGAGAATTGAAGCGTCTTCTACTGGCTTGAACTCAACAATCTCCAAGATTGTGAGAATGGTTGAGGATGCACAAGGCCATGAAGCTCCAATACAAAGGCTTGCCGATTCCATAGCTGGGCCATTTGTGTACACTGTATTAACTCTCTCAGCGGCAACATTTGCATTTTGGTACTGCTTTGGTACCCATATCTTTCCTGATGTTTTGATCAATGATATTGCTGGACCAGATGGAGACCCCTTGCTTTTGAGCTTGAAACTTTCAGTTGATGTCTTGGTAGTTTCTTGTCCATGTGCACTTGGACTAGCCACTCCCACAGCAATTCTAGTTGGCACCTCCCTTGGGGCTCGAAGAGGACTTCTAATAAGAGGAGGAGATGTATTGGAACGCCTGGCAGGCATAGATTGTGTTGCTTTGGACAAGACAGGAACACTTACTGAAGGAAAGCCTACTGTTTCTTCTGTGGTTTCGTTTGTTTATGGAGAAGCAGAAATACTTCAAGTTGCTGCTGCAGTGGAGAAAACTGCTTCACATCCCATTGCAAGAGCTATCATAGATAAAGCAGAATCTTTGAATTTGACCATTCCAGGCACAACAGGGCAGTTGGTAGAACCTGGCTTCGGATCTTTTGTCAATGTAAATGGACAACTAGTTGCTGTTGGTTCATTAGAATGGGTTAATGATCGATTTGAGCAAAAAGCAAGTACCTCTGATCTTAAGAATCTCGAGCATTCTGTGTTTCAGTCATTAGAGTGGATATCATCTTCAAATAATTCAAAAACAGTTGTTTACGTTGGGCGCGAAGGAGAAGGCATCATTGGTGCTATTGTAATATCTGATCGGTTGCGCTATGATGCTGAATCCACTGTTAATAGGCTCCAGAAGAAGGGAATCAGAACGGTCCTCTTATCTGGAGACAGGGAAGAGGCAGTTGCAAGTGTAGCCAAGTCAGTTGGAATAGAAAAGGAATTTGTTCACTCATCTTTGACTCCTCAAAACAAATCTGACCTTATTTCCACTCTGAAAACTGCTGGACATCGAGTTGCTATGGTTGGTGATGGCATAAATGATGCACCATCTTTGGCTTCTTCCGATGTTGGGATTGCTCTGCAGCTTGAAGCACATGAAAATGCTGCTTCGAATGCCGCGTCCATTTTACTTCTTGGAAATAGAATATCTCAGCTTGTAGACGCAATGGAGCTAGCACAAGCAACAATGTCTAAGGTGTACCAAAATTTGTCGTGGGCAATAGCTTACAATGCCGTTGCCATTCCAATTGCTGCTGGAGTGCTGCTCCCAGGATTTGACTTTGCAATGACTCCTTCCCTTTCAGTTATTTTGTTATATTCTGATTCGTGGTCTTATGGCTTTAAGTTCAATATTCGTCGTCACCAACTCATTACTTCTGCAGATCCATGCCCCCAAAGAACCTCAAAAATCTACCTGAATGGCATACAAAAGATGTCAACCAGCTTCATTTTAATAAATTATAGAGCCAACCGAACATCAGGGAAAGACCACATCACATCAAACGTGTCAGTTAAGTGCATATCCATGACTCTCTCTGTGCTTTAA 2928 45.46 MDRGYDVAAAVHTENLAKSFRRRSDALMAADLARLSLWHHQRQFFHSASKSQASLFDSRPGFLPIRHRPQSLVWKQYPRRFGRCLGHRFVVSNTLEAELRAQNTVLQQERRDESSVLLDVSGMMCGACVSRVKSILSSDDRVDSVVVNMLTETAAIRLKSDEVGAEAGSAVNVAESLARRLTDCGFPTVLRNSEVGVAENVRKWKEMVEKKRKMLVKSRNRVAIAWTLVALCCGSHASHILHTFGIHIHHGPVMEILHNSYAKGCFALVALLGPGRELLFDGLRAFRKGSPNMNSLVGFGAVAAFIISAVSLLNPELDWDASFFDEPVMLLGFVLLGRSLEERARVKASSDMNELLSLISSHSRLVITPSEGNSSTDDVLCSDAMCIQVSTDDIRVGDSVLVLPGETIPVDGKVLAGRSVVDESMLTGESLPVFKEAGLIVSAGTVNWDGPLRIEASSTGLNSTISKIVRMVEDAQGHEAPIQRLADSIAGPFVYTVLTLSAATFAFWYCFGTHIFPDVLINDIAGPDGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARRGLLIRGGDVLERLAGIDCVALDKTGTLTEGKPTVSSVVSFVYGEAEILQVAAAVEKTASHPIARAIIDKAESLNLTIPGTTGQLVEPGFGSFVNVNGQLVAVGSLEWVNDRFEQKASTSDLKNLEHSVFQSLEWISSSNNSKTVVYVGREGEGIIGAIVISDRLRYDAESTVNRLQKKGIRTVLLSGDREEAVASVAKSVGIEKEFVHSSLTPQNKSDLISTLKTAGHRVAMVGDGINDAPSLASSDVGIALQLEAHENAASNAASILLLGNRISQLVDAMELAQATMSKVYQNLSWAIAYNAVAIPIAAGVLLPGFDFAMTPSLSVILLYSDSWSYGFKFNIRRHQLITSADPCPQRTSKIYLNGIQKMSTSFILINYRANRTSGKDHITSNVSVKCISMTLSVL 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1514178 1523998 + CmaCh09G003660.1 Cma09g00366 300371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00366 975 SUPERFAMILY Calcium ATPase, transduction domain A 383 472 IPR008250 -
Cma09g00366 975 Pfam haloacid dehalogenase-like hydrolase 585 815 - -
Cma09g00366 975 Gene3D - 600 733 IPR023299 GO:0000166
Cma09g00366 975 Coils Coil 92 112 - -
Cma09g00366 975 SUPERFAMILY Calcium ATPase, transmembrane domain M 322 948 IPR023298 -
Cma09g00366 975 ProSitePatterns E1-E2 ATPases phosphorylation site. 591 597 IPR018303 -
Cma09g00366 975 Gene3D - 580 853 IPR023214 -
Cma09g00366 975 SUPERFAMILY HAD-like 588 896 IPR036412 -
Cma09g00366 975 CDD HMA 118 187 IPR006121 GO:0046872
Cma09g00366 975 Pfam Heavy-metal-associated domain 118 163 IPR006121 GO:0046872
Cma09g00366 975 PANTHER ATP7, ISOFORM B 94 905 - -
Cma09g00366 975 Pfam E1-E2 ATPase 382 569 - -
Cma09g00366 975 ProSiteProfiles Heavy-metal-associated domain profile. 115 190 IPR006121 GO:0046872
Cma09g00366 975 SFLD p-type atpase 572 855 IPR044492 -
Cma09g00366 975 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 385 894 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma09g00366 975 Gene3D - 108 194 - -
Cma09g00366 975 SUPERFAMILY HMA, heavy metal-associated domain 114 167 IPR036163 GO:0046872
Cma09g00366 975 Gene3D - 344 476 - -
Cma09g00366 975 SFLD C1.7: P-type atpase like 572 855 - -
Cma09g00366 975 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 293 885 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma09g00366 975 PRINTS P-type cation-transporting ATPase superfamily signature 589 603 - -
Cma09g00366 975 PRINTS P-type cation-transporting ATPase superfamily signature 802 821 - -
Cma09g00366 975 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Cma09g00366 975 PRINTS P-type cation-transporting ATPase superfamily signature 747 757 - -
Cma09g00366 975 CDD P-type_ATPase_HM 221 884 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00366 K17686 copA, ctpA, ATP7; P-type Cu+ transporter [EC:7.2.2.8] - csv:101214637 1498.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00366 Cma-Chr9:1514178 Cma05g00708 Cma-Chr5:3753976 2.20E-61 dispersed
Cma09g00366 Cma-Chr9:1514178 Cma16g00254 Cma-Chr16:1185501 6.91E-180 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g165 Blo01g01443 . Bda01g00641 . . Bpe02g00510 . . . . . . Car09g00315 . . . Cpe06g00260 . . . . . . . Cla05g01629 Cam05g1738 Cec05g1746 Cco05g1803 Clacu05g1729 Cmu05g1614 Cre05g1742 . . Cone17ag0948 . Lsi04g01385 . . . . . . . . . . . . . Cmo09g00365 Cma09g00366 . . Car05g00660 . . Bhi09g03080 . . . . . . . . . . . . . . . . Cme07g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010516 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00366 Cma_Chr09 FPKM 10.209549 11.2161 17.11585 16.866211 23.534369 21.825918 24.446857 21.691313 19.861692 18.845184