Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00371 ATGCTGTCTCATTTGAGTACAAATATGGGTTTACTCTGCAGCAGAAGTCGTCACTACAATGAACAAGATTCTGAAGAGAATGCGCAGGCTGCTGAAATAGAGAGGCGGATTGAACAAGAAACAGAGGCTGAAAAACATATACAGAAACTTCTTTTGCTTGGTGCTGGAGAGTCTGGAAAGTCCACCATTTTTAAGCAGATAAAGTTGTTGTTCCAAACTGGCTTTGATGAGACAGAGCTAAAGAGCTACATTCCAGTCATTCATGCAAATGTGTATCAGACTATAAAAGTATTACATGACGGTTCAAAGGAGCTCGCTCAAAATGATAAAGAGTTCTCGAAGTATGTTTTATCCAATGAAAATAAGGAAATTGGCGAGAAATTATCGGATATCGGAGGTAGATTGGATTACCCGCGTTTGACTAGGGAGCATGCAAAGGATATAGAGACTCTTTGGAAGGATGCTGCGATTCAGGAAACGTATTCACGTGGTAATGAACTACAAGTTCCAGATTGCACACAATATTTCATGGAAAATTTGCAAAGATTATCTGATGCAAATTACATTCCGACTAAGGAGGACGTCCTATACGCAAGAGTTCGTACAACCGGTGTTGTTGAAATTCAATTTAGTCCCGTTGGAGAAAATAAAAAGAGCGGCGAAGTGTATAGACTCTTTGATGTTGGTGGTCAGAGAAACGAGAGGCGAAAATGGATTCATCTTTTCGAAGGTGTTACAGCAGTAATCTTTTGTGCTGCTATTAGTGAGTATGATCAAACACTTTTTGAGGATGAACAGAAGAACCGAATGATGGAGACCAAGGAACTTTTCGAGTGGGTTCTGAAACAAGAGTGTTTTGAGAATACGTCATTTATGCTTTTTCTTAACAAGTTCGATATCTTCGAGAAAAAGGTTCTAAACGTCCCTCTCAGTGTATGTGAATGGTTTAACGATTATCAGCCGGTTTCGACTGGAAAACAAGAGATCGAGCATGCCTATGAGTTCGTGAAGAAAAAATTCGAGGAGTTGTATTTTAAGAGCACGGCACCAGATCGAGTAGACCGGGTGTTTAAGGTATACAGAACAACTGCTCTCGATCAGAAACTTGTAAAGAAGACGTTCAAGCTCGTAGATGAAACATTGAGGCGGCGAAATCTGTTGGAGGCTGGGTTATTGTAA 1179 40.29 MLSHLSTNMGLLCSRSRHYNEQDSEENAQAAEIERRIEQETEAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDETELKSYIPVIHANVYQTIKVLHDGSKELAQNDKEFSKYVLSNENKEIGEKLSDIGGRLDYPRLTREHAKDIETLWKDAAIQETYSRGNELQVPDCTQYFMENLQRLSDANYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFEWVLKQECFENTSFMLFLNKFDIFEKKVLNVPLSVCEWFNDYQPVSTGKQEIEHAYEFVKKKFEELYFKSTAPDRVDRVFKVYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1539595 1543947 - CmaCh09G003710.1 Cma09g00371 300376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00371 392 CDD G-alpha 48 386 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 Gene3D - 76 201 IPR011025 GO:0007165
Cma09g00371 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 389 IPR027417 -
Cma09g00371 392 SUPERFAMILY Transducin (alpha subunit), insertion domain 75 200 IPR011025 GO:0007165
Cma09g00371 392 Pfam G-protein alpha subunit 30 380 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 9 392 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 ProSiteProfiles G-alpha domain profile. 46 392 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 Gene3D - 49 380 IPR027417 -
Cma09g00371 392 PRINTS Plant G protein alpha subunit signature 35 44 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 PRINTS Plant G protein alpha subunit signature 85 98 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 PRINTS Plant G protein alpha subunit signature 100 114 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 PRINTS Plant G protein alpha subunit signature 124 138 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 PRINTS Plant G protein alpha subunit signature 208 223 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 PRINTS Plant G protein alpha subunit signature 278 289 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 PRINTS Plant G protein alpha subunit signature 327 342 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 PRINTS Plant G protein alpha subunit signature 344 356 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cma09g00371 392 SMART galpha_1 27 391 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 PRINTS Alpha G protein (transducin) signature 49 64 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 PRINTS Alpha G protein (transducin) signature 188 210 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 PRINTS Alpha G protein (transducin) signature 223 240 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 PRINTS Alpha G protein (transducin) signature 245 273 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 PRINTS Alpha G protein (transducin) signature 291 300 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma09g00371 392 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 9 392 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00371 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - csv:101216232 760.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00371 Cma-Chr9:1539595 Cma16g01196 Cma-Chr16:9109705 1.91E-60 dispersed
Cma09g00371 Cma-Chr9:1539595 Cma01g01699 Cma-Chr1:11561030 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00371 Cma_Chr09 FPKM 10.860051 13.730733 12.907015 12.195427 17.364527 12.05977 19.949572 17.618944 18.091856 19.60358