Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00372 ATGGGTATGAAGAGGAAGTTGACATGGAAATCGATGATCGTTCCGAGTTGCTACACGGCGGCGCTCCGCCGTCTATCGGAGTCCGACGATGACGAGCGGCGGCAGGTTTCTAAAAAAGCTTCGTCGCAGAGGCTGTCGCTGTCGGACGCCAGTAACCCGAGTTCGGTCTTGTCGATCGACGACTTGTCGAATTCTCTTGTCGGACCGAAGCTTCATATTTTTTCCTTTGCGGAACTTCGAACCATCACTCACAATTTCGCTTCGTCCAATTTGCTTGGTGAAGGCGGGTTCGGTCCGGTCTACAAAGGCTTCGTCGATGATAAAATCAAACCGGGTTTGGAAGCTCAGCCGGTCGCCGTTAAATTGCTCGACCTCCATGGATCCCAAGGCCATAAAGAATGGCTGGCAGAGATTATAATTCTAGGGCAAATGAGGCATCAAAATTTGGTGAAACTAATCGGTTACTGTTGGGAAGAAGATTACAGGCTTTTGGTTTACGAGTATATGGCCAGAGGCAGTTTAGAAAACCAGCTATTTAGAAAGTATTCAGCTGCTTTACCTTGGTCAACGAGGATGAAAATTGCTTTAGAAGCAGCCAAAGGCCTTCAATTCCTACACGAAGCCGATCCACCCGTTATATTCAGGGATTTCAAAACTTCTAATATCCTCTTGGATTCTGATTATACAACGAAGCTTTCAGATCTTGGGTTAGCTAAAGATGACGTTGACTGTGAAGACCAACCAGACACGTCTTGTATTATGGGAACTCAAGGCTATGCCGCTCCTGAGTACGTCAAATCTGGCCATTTGACGACGATGAGTGACGTGTACAGCTACGGCGTCGTTCTACTAGAGCTGCTGACGGGGAAGCGGTCAATGGACCGAAAGATCGGCGAGTTTCTAGTGGACTGGGCTAAGCCATTTCTAAAGGACTCGAAACGGCTCTACCGGATCATGGACCCAAAGCTCGAGGGCATGTACTCGGCCGACGGCGCTCGTAAGGCCGCCGCCTTAGCTCATAAATGCTTGAGCCGCAGCCCCAAGCGACGGCCTTCCGTGACGGAAGTCGTTAATGTGTTGAAGTCTTTGCAAGACTTTAACGACGTGTGCACGGAGCCGTTTGTTTACGTGGTGGAGGACTGCGGCGGGGAGGAGGAGAAGAAGGGAAGAGATGGGAGAGTTATTGAAGGGGATGTGCTTGGGCTTGGTGGGCTGGGCCTAGGCCTGAATTGGAAAAACTGGAGGCCCATCTCTTGTCGACGCCGGAAAATGGCAGTCGGTGTGAGAGTTGCCGGGAGTATTATCGGCCGCGATCGAGTTCTCACGGCGGTTATTGCCGGCGCGTCTAGTCTTTCGTTCGTGGGATCAGGATTCATAGTGCTGTGTTACGTCCTCTTCAAAGAACTTCGCAAGTTCTCCTACAAGCTTGTCTTCTATCTTGCACTCTCTGATATGCTTTGCAGTTTCTTCACTATGATTGGGGATCCGGCAACGGGATTTTACTGTTATACTCAGGGCTATAGCACTCATTTCTTTTGTGTGGCATCGTTCTTGTGGACCACAACAATTGCATTCACTCTTCACCGTACTGTTGTTAGACACAAAACCGACGTTGAAGATTTGGAGGCTATGTTTCACTTATATGTATGGGGAACATCGTTAGTGTTGACTGTTATACGTTCAATTGGTAATAACCATGGACATTTGGGTACCTGGTGTTGGGCACAGTCTAGTCGTACAGGAAAGGCTGTTCACTTTATAACATTTTACATGCCACTCTGGGGTGCAATTCTCTACAATGGGTTTACTTACCTTCAAGTGATACGCATGCTTAATAATGCTACCCGTATGGCAGTTGGCATCTCAGATAGGGCTTACCAGTCAGATGCTAGAGCAGACATGAAGGCTTTAAACAGATGGGGATATTATCCGCTCATCCTCATAGGGTCATGGGCTTTTGGTACAATCAGCCGCATTCATGATTTTATTGAGCCAGGTCATAAAATCTTCTGGTTGTCAGTTCTTGATGTTGGGATGGCTTCACTAATGGGCTTGTTCAATTCAATAGCATATGGTCTGAATTCTTCTGTACGGCGGGCAATTTATGAAAGATTAGACTTGTTTTGGCCTGAGAAGCTTCGAAGATGGCTCCCCAACAATTCAAGGTTCCGGAACCAAGAACAAGAAGGTGAACTGGTTTCCTTGAGAAGTCTAGATCAGCCATAG 2226 47.75 MGMKRKLTWKSMIVPSCYTAALRRLSESDDDERRQVSKKASSQRLSLSDASNPSSVLSIDDLSNSLVGPKLHIFSFAELRTITHNFASSNLLGEGGFGPVYKGFVDDKIKPGLEAQPVAVKLLDLHGSQGHKEWLAEIIILGQMRHQNLVKLIGYCWEEDYRLLVYEYMARGSLENQLFRKYSAALPWSTRMKIALEAAKGLQFLHEADPPVIFRDFKTSNILLDSDYTTKLSDLGLAKDDVDCEDQPDTSCIMGTQGYAAPEYVKSGHLTTMSDVYSYGVVLLELLTGKRSMDRKIGEFLVDWAKPFLKDSKRLYRIMDPKLEGMYSADGARKAAALAHKCLSRSPKRRPSVTEVVNVLKSLQDFNDVCTEPFVYVVEDCGGEEEKKGRDGRVIEGDVLGLGGLGLGLNWKNWRPISCRRRKMAVGVRVAGSIIGRDRVLTAVIAGASSLSFVGSGFIVLCYVLFKELRKFSYKLVFYLALSDMLCSFFTMIGDPATGFYCYTQGYSTHFFCVASFLWTTTIAFTLHRTVVRHKTDVEDLEAMFHLYVWGTSLVLTVIRSIGNNHGHLGTWCWAQSSRTGKAVHFITFYMPLWGAILYNGFTYLQVIRMLNNATRMAVGISDRAYQSDARADMKALNRWGYYPLILIGSWAFGTISRIHDFIEPGHKIFWLSVLDVGMASLMGLFNSIAYGLNSSVRRAIYERLDLFWPEKLRRWLPNNSRFRNQEQEGELVSLRSLDQP 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1552313 1558852 + CmaCh09G003720.1 Cma09g00372 300377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 594 617 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 542 557 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 504 517 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 685 701 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 519 537 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 667 684 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 441 456 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 474 496 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 581 593 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 637 658 IPR022340 -
Cma09g00372 741 PRINTS Putative plant GPCR, GCR1, signature 458 472 IPR022340 -
Cma09g00372 741 PRINTS GCR1-cAMP receptor family signature 643 661 IPR022343 -
Cma09g00372 741 PRINTS GCR1-cAMP receptor family signature 502 520 IPR022343 -
Cma09g00372 741 PRINTS GCR1-cAMP receptor family signature 452 470 IPR022343 -
Cma09g00372 741 PRINTS GCR1-cAMP receptor family signature 471 486 IPR022343 -
Cma09g00372 741 PRINTS GCR1-cAMP receptor family signature 675 694 IPR022343 -
Cma09g00372 741 SUPERFAMILY Protein kinase-like (PK-like) 64 360 IPR011009 -
Cma09g00372 741 SMART serkin_6 86 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00372 741 Gene3D Transferase(Phosphotransferase) domain 1 169 373 - -
Cma09g00372 741 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 32 390 - -
Cma09g00372 741 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 441 695 IPR017981 GO:0004888|GO:0007166|GO:0016021
Cma09g00372 741 ProSiteProfiles Protein kinase domain profile. 86 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00372 741 MobiDBLite consensus disorder prediction 28 54 - -
Cma09g00372 741 SUPERFAMILY Family A G protein-coupled receptor-like 440 713 - -
Cma09g00372 741 Pfam Protein kinase domain 88 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00372 741 Pfam Slime mold cyclic AMP receptor 444 695 - -
Cma09g00372 741 MobiDBLite consensus disorder prediction 40 54 - -
Cma09g00372 741 Gene3D Phosphorylase Kinase; domain 1 67 168 - -
Cma09g00372 741 Gene3D - 438 717 - -
Cma09g00372 741 PANTHER OS01G0588500 PROTEIN-RELATED 32 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00372 K22987 GCR1, CRLA; cAMP receptor-like G-protein coupled receptor - csv:101218136 739.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01606 Cma09g00372 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01697 Cma-Chr1:11551936 Cma09g00372 Cma-Chr9:1552313 0 dispersed
Cma09g00372 Cma-Chr9:1552313 Cma11g00733 Cma-Chr11:3588221 5.04E-159 dispersed
Cma01g01696 Cma-Chr1:11546565 Cma09g00372 Cma-Chr9:1552313 0 wgd
Cma17g00684 Cma-Chr17:5716380 Cma09g00372 Cma-Chr9:1552313 1.42E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g174 Blo01g01438 . Bda01g00644 . . Bpe02g00515 . Bma01g02189 . . Cma01g01606 . Car09g00321 . . . Cpe06g00265 . . . . . . . Cla05g01637 Cam05g1746 Cec05g1756 Cco05g1812 Clacu05g1738 Cmu05g1623 Cre05g1750 Cone4ag1705 Cone7ag1621 . . Lsi04g01377 . . . . . . . . . . . Sed13g1922 Cmo01g01688 Cmo09g00373 Cma09g00372 . Car01g01310 . . Cpe02g00297 Bhi09g03068 Tan01g3494 Cmetu07g1418 . . . . . . . . . . . . . . Cme07g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68788 PF00069 Pkinase 3.90E-45 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00372 Cma_Chr09 FPKM 11.038445 11.481692 12.609337 11.198949 5.683223 4.503709 5.940053 9.85777 10.64426 11.989912