Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00375 ATGGATCCCTTCGATTTGTTTCGGAAAGATTTTCCGGCTAAGCAAATAATGAACGTGTCGAAGAAAGGATCGCAAACCAACGAGGCAAACCTAAGCATTGGAAGCAAGGTGACAGCTTTGAATCCGAATGCCGCTGAGTTTATTCCGTTCGCTCTCAGAGCACCTTCAGTTGGAAGTAGTAGTGTGCCAGATTTGACTGAAAGATTTTCGTCTTCTGGGACGTTAGGAAAAGCTGTTCTAGATAGGACTGAGTCATCTGTGTCTAATAATTCTGATGACGAATCTCGTCAATTCTGGAGGCATCAGCTCCCTGATGATATCATACCTGATTTCAAGTCAATGGGGGAAGATGAGAACCTATCTCTTGGAAATATTTCGTTGGCAGGCTTATCGTTGCATGATGACAATGAAGCCTCTTTATTCGCGGCTACTGTTGGCAGTGAATATTTGTTGAATGATCAGCAACATTCAAATCTAAATCACTTTAATGGAAATCAATTTGCTGATAGGTTCAGATTCTCGACTGCTTCGTATGGAGAAGACCCATCTGCAGCTAGTCTTTTCCAAATTTCGAATAAACCTTGGCAGAAGCCAGTTCACAACAGTAATCTACTGGTTAGCAATGAGCGGCACCTTCCTTATCACGGAAATACTGTGAGGGGATCAACCATGGAAGTCTTGAGTGAGCAAACAACTATGGATGAAAGTGATACTCTGAACCCTGTTGATTTTTTGGCTTTACAGTTCCCTGGTTTTGCTGCTGAAAGCCTCGCAGAAGTTTACTTTGCCAATGGAGGTGACTTAAACCTGACTGTTGAGATGCTCACTCAATTAGAGCTTCAAGTCGATGCTGGGATAAGTCAAAATCTGAATTCCAAGACAATGTCTGCCCCCAATCTTAGTGGAATGGACTTTCCTGCACTTACAGTGTCAGGTGGTCAAAATGGTCATCCAAAATTTGATGGGGCTGATCTTCAACAAAGCACCAGTCCTTATCTTTCTACTGATAAGGACGGCATGCTTTTCTTCAAGCCGAGCACCGCCCCATCTAGAGGTGCTATTGATTTTGCGTCCACTGTCAGGAAATTAGCATCTCAGGATTCTGGTACGTGGAAGTACAACGGACACGGTTCTGCTGATGACTCTATTGGATCAAGTAGAAGTTCTCATATTTTAGGCGGTAAGTACACTACTGGTGGTCATGGGAAAGACACCTATAGTGAAAGGTTGCTACACCGGGGTTCAGCTCGGGCTGCACCCGTTTGGCTTGAAACAGGCGAATCAGTTGGAAACATGTATTCTGAGCAGCGGGAGGAAGCACGTGATCATGCACGCCTTCGAAATGCATATTTTGAGCAGGCACGGCAAGCATACCTCATTGGTAATAAGGCTTTAGCAAAGGAGCTAAGTGTTAAGGGACAGTTTCATAATGTGCACATGAAGGCAGCTCATGGAAGGGCCCAAGATTCTATATATCGGCAGAGGAATCAAATAGGCGCAGACAATCAGGGAAATGGAAGGGGACACGAACGCATGATCGACCTGCACGGGCTGCATGTTAACGAAGCGATTCATGTCCTGAAGCACGAGTTGAGTGTGCTGAGGGGTACTGCTCGGGCCGCTGGACAACGTCTGCAGGTTTATATTTGTGTTGGAACAGGACACCACACCCGCGGCTCCCGCACTCCTGCTAGACTTCCAGTGGCTGTACAGAGATATTTGATCGAAGAAGAAGGCCTCGACTTCAGTGAGCCGCAACCGGGGCTGCTTAGAGTTGTGATATATTGA 1788 45.81 MDPFDLFRKDFPAKQIMNVSKKGSQTNEANLSIGSKVTALNPNAAEFIPFALRAPSVGSSSVPDLTERFSSSGTLGKAVLDRTESSVSNNSDDESRQFWRHQLPDDIIPDFKSMGEDENLSLGNISLAGLSLHDDNEASLFAATVGSEYLLNDQQHSNLNHFNGNQFADRFRFSTASYGEDPSAASLFQISNKPWQKPVHNSNLLVSNERHLPYHGNTVRGSTMEVLSEQTTMDESDTLNPVDFLALQFPGFAAESLAEVYFANGGDLNLTVEMLTQLELQVDAGISQNLNSKTMSAPNLSGMDFPALTVSGGQNGHPKFDGADLQQSTSPYLSTDKDGMLFFKPSTAPSRGAIDFASTVRKLASQDSGTWKYNGHGSADDSIGSSRSSHILGGKYTTGGHGKDTYSERLLHRGSARAAPVWLETGESVGNMYSEQREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQFHNVHMKAAHGRAQDSIYRQRNQIGADNQGNGRGHERMIDLHGLHVNEAIHVLKHELSVLRGTARAAGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLRVVIY 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1567132 1571062 + CmaCh09G003750.1 Cma09g00375 300380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00375 595 MobiDBLite consensus disorder prediction 374 400 - -
Cma09g00375 595 SMART DUF1771_2 432 497 IPR013899 -
Cma09g00375 595 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 17 595 - -
Cma09g00375 595 CDD CUE_CID7_like 239 281 IPR041806 -
Cma09g00375 595 SUPERFAMILY SMR domain-like 511 593 IPR036063 -
Cma09g00375 595 Pfam Domain of unknown function (DUF1771) 433 496 IPR013899 -
Cma09g00375 595 ProSiteProfiles Smr domain profile. 513 595 IPR002625 -
Cma09g00375 595 MobiDBLite consensus disorder prediction 374 393 - -
Cma09g00375 595 SMART SMR_2 510 595 IPR002625 -
Cma09g00375 595 Gene3D - 480 594 IPR036063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00375 - - - cmo:103493901 1039.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01694 Cma09g00375 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00375 Cma-Chr9:1567132 Cma09g00481 Cma-Chr9:2136688 4.18E-06 dispersed
Cma01g01694 Cma-Chr1:11535579 Cma09g00375 Cma-Chr9:1567132 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g176 . . . . Bpe02g01566 . . . . . Cma01g01694 . . . . . Cpe06g00267 . . . . . . . Cla05g01639 Cam05g1749 Cec05g1758 Cco05g1814 Clacu05g1740 Cmu05g1625 Cre05g1752 Cone4ag1707 Cone7ag1624 Cone17ag0953 Cone20ag0297 Lsi04g01375 . . . Blo17g00269 Blo18g00255 Bda01g01353 Bda13g01583 Bpe14g00285 . Bma01g00905 Bma02g00334 . . Cmo09g00377 Cma09g00375 . Car01g01308 . . Cpe02g00299 Bhi09g03065 . . . Hepe01g1926 Mch11g0464 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004395 2 0 1 2 2 1 1 1 1 1 1 1 2 0 1 3 1 4 1 1 1 1 1 1 1 1 1 5 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00375 Cma_Chr09 FPKM 90.602982 94.307076 58.35743 59.611927 68.377655 65.58712 68.807915 81.064545 78.795891 80.274979