Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00377 ATGCCCCCCATCAACGCCGCCGTCCACCGCCGCCACCAGTCCTCTGCATCCCAATTAGCTCAATTCCACACACCTACTAATGCTGGCGATGACGACGATCTTCTTCCTTCCACCCAGACAGTTCTCTCATCGCGATCTTCAACCTCGCATAAACCCTTAGCGACCTCCGACTTATCGCTCCACATTCGCGCTTCCAAGAGGCCGAAGCGTTCTGCTCCGACGACCACTGGACAGGTAAACATTCCCTCTATAACACATTGCGATGTCGGATTTAAGCCAAATTTTGATAGACACGATGTCGCTGCTGCTTTGGATGATGGTGAAGTATTCGGTTCGTCGGAAATGGATTTGGGTTGCAGTTTGGATTTGATACAGCCGAGCATGGTTGGCTGCAGTTACGAAACTCATGATGCAAACTCGGTAGAGGAGATATTTAATGGGGATGGTGATTTTTCTGGTGCGACGGATGAATGTAAGGGGTCGAAGGTAAAGGGGGGCTACTTACTCAATTCGATTGAATCTAAGTTGATGAATTCGAGAGTAGATTGCGATGTTGGAGTCAGTGGCAGTGGAGTTGACAAGGAGAGCAGTGATGATTTTGAGTCGGATAAGGAGCTAGACTTATTGCTTAATCTTCATTCGCAACTGGATGAGGAAGACCGTATTAGTGGAGTGGGATTTGGTACTGAGGAATCATATTTTCCAGTGGATGAAGATCTGATTCAATGTCCTCTTTGTGGAGTTGATATTTCTGATCTTAGCGACGAGCAACGTCTTGTACACACAAATGATTGTATTGACAAAGAGGACGCCCAAGCTCAAACTGCTGCTCTCACCCCTGATAAAAAGCAAACTTCAGGGCCTCAACAATCTGCTGATAATTCCAGATTTTCAACTGTTCTCAAATGGTTGCATGATCTCGGTTTATCGAAATATGAAGATATTTTTGTTAGAGAGGAGATCGATTGGGAAACATTACAGTGGTTGACTGATGAGGATCTCGATAATGTGGGTATTAGTGCACTTGGCCCCCGAAGGAAGATCACACGTGCTTTGTCCGAACTCAGAAAAGAATCTTCTGCAGTTGAAACTTGCACGAATACACATGCCCCTTCTGGTACTGGGCAACATAGTAACAATGGTTCAGATGGGTGTGAAGGATCAACCAATGGAACCAATAGAACACCTACGAACAAGTTGATTACTGATTATTTCCCAGGCTTTGCCACTAATAAGAAGAATGCATGCAGCATTTCTACTGGTCAGAGAGATGTGGGAAAAAAGTTACCTGACTCTCTTAACAAAGATAAAAGTAAAACTGCAAAGAGAAATGTAAGAAATGGGAAGCCTGGGACTGTTCCAGTCTGGAGTTGTATACCGGGGACGCCATTTAGAGTGGATGCTTTTCGACATCTTAGAGGAGACTGTTCCCATTGGTTTCTTACTCACTTTCACATGGATCATTATCAAGGTTTAACAAAGTCATTTCGTCATGGAATGATTTATTGTTCGCCTATTACGGCAAAGCTGGTAAACATGAAGCTTGGAATCCCATGGGAAAGGTTACAAGTTTTACCTCTCAACCAAAAAGTTAACATTGCGGGAACAGATGTAACCTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCCAGTGGTAAGGCTGTTCTACATACAGGGGACTTCCGATATTGTGAGCAAATGGGAAGCTTGTCGGTTTTTCAAACATGTCGTATCCATACTCTGATCCTTGATACCACGTATTGTGATCCACAGTATGATTTCCCAAAGCAGGAGACCGTTATACAGTTTGTAATTGATGCCATTCAAGCTGAAGCTTTCAACCCTAAAACCCTTTTCCTAATTGGATGTTATACCATCGGAAAGGAACGACTTTTTTTGGAAGTTGCCCGCGTTCTGCGCAAGAAGGTGTATGTAAGTTCAGCAAAGTTACGCATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGCAGTGGTTTACAGTGAATGAACGGGAAAGTCACATACATGTCGTACCTCTGTGGACACTTGCGAGCTTCAAACGACTGAAGCATTTATCAAATCAATACGCAAATCGATTCAGTCTTATAGTTGCTTTCTCTCCCACCGGCTGGGCACTTTCAAAAGGAAAGAAGAAATCTCCTGGAAGAAGGTCGCAGCAAGGTACAATTATAAGATATGAAGTGCCATATAGTGAGCATAGCAGCTTCTCAGAACTGAAGGATTTTGTAAAGCTCGTCTCTCCTGTAAACATAATACCAAGTGTGAATAATCATGGACCTGACTCAGCCCGTACCATGATCTCGCTTTTGTCATCTTGA 2361 43.71 MPPINAAVHRRHQSSASQLAQFHTPTNAGDDDDLLPSTQTVLSSRSSTSHKPLATSDLSLHIRASKRPKRSAPTTTGQVNIPSITHCDVGFKPNFDRHDVAAALDDGEVFGSSEMDLGCSLDLIQPSMVGCSYETHDANSVEEIFNGDGDFSGATDECKGSKVKGGYLLNSIESKLMNSRVDCDVGVSGSGVDKESSDDFESDKELDLLLNLHSQLDEEDRISGVGFGTEESYFPVDEDLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDAQAQTAALTPDKKQTSGPQQSADNSRFSTVLKWLHDLGLSKYEDIFVREEIDWETLQWLTDEDLDNVGISALGPRRKITRALSELRKESSAVETCTNTHAPSGTGQHSNNGSDGCEGSTNGTNRTPTNKLITDYFPGFATNKKNACSISTGQRDVGKKLPDSLNKDKSKTAKRNVRNGKPGTVPVWSCIPGTPFRVDAFRHLRGDCSHWFLTHFHMDHYQGLTKSFRHGMIYCSPITAKLVNMKLGIPWERLQVLPLNQKVNIAGTDVTCFDANHCPGSIIILFEPPSGKAVLHTGDFRYCEQMGSLSVFQTCRIHTLILDTTYCDPQYDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTIGKERLFLEVARVLRKKVYVSSAKLRILKCLGFSAEDMQWFTVNERESHIHVVPLWTLASFKRLKHLSNQYANRFSLIVAFSPTGWALSKGKKKSPGRRSQQGTIIRYEVPYSEHSSFSELKDFVKLVSPVNIIPSVNNHGPDSARTMISLLSS 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1574606 1580842 + CmaCh09G003770.1 Cma09g00377 300382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00377 786 MobiDBLite consensus disorder prediction 362 398 - -
Cma09g00377 786 MobiDBLite consensus disorder prediction 419 448 - -
Cma09g00377 786 SUPERFAMILY Metallo-hydrolase/oxidoreductase 465 769 IPR036866 -
Cma09g00377 786 MobiDBLite consensus disorder prediction 428 443 - -
Cma09g00377 786 MobiDBLite consensus disorder prediction 273 294 - -
Cma09g00377 786 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 241 782 - -
Cma09g00377 786 Gene3D - 290 369 IPR013761 -
Cma09g00377 786 SMART SAM_4 292 358 IPR001660 GO:0005515
Cma09g00377 786 Gene3D - 600 747 - -
Cma09g00377 786 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 241 782 - -
Cma09g00377 786 MobiDBLite consensus disorder prediction 277 294 - -
Cma09g00377 786 MobiDBLite consensus disorder prediction 23 79 - -
Cma09g00377 786 CDD SAM_superfamily 300 354 - -
Cma09g00377 786 CDD SNM1A-1C-like_MBL-fold 441 597 - -
Cma09g00377 786 Gene3D - 459 769 IPR036866 -
Cma09g00377 786 ProSiteProfiles SAM domain profile. 295 358 IPR001660 GO:0005515
Cma09g00377 786 SUPERFAMILY SAM/Pointed domain 293 357 IPR013761 -
Cma09g00377 786 Pfam SAM domain (Sterile alpha motif) 294 356 IPR001660 GO:0005515
Cma09g00377 786 MobiDBLite consensus disorder prediction 23 55 - -
Cma09g00377 786 Pfam DNA repair metallo-beta-lactamase 669 772 IPR011084 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00377 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 1276.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00377 Cma-Chr9:1574606 Cma11g00229 Cma-Chr11:1158837 1.02E-08 dispersed
Cma01g00410 Cma-Chr1:2077942 Cma09g00377 Cma-Chr9:1574606 6.80E-62 transposed
Cma01g01693 Cma-Chr1:11533643 Cma09g00377 Cma-Chr9:1574606 1.44E-09 transposed
Cma02g00629 Cma-Chr2:3798991 Cma09g00377 Cma-Chr9:1574606 3.52E-17 transposed
Cma19g00952 Cma-Chr19:8432756 Cma09g00377 Cma-Chr9:1574606 1.04E-36 transposed
Cma01g01692 Cma-Chr1:11531421 Cma09g00377 Cma-Chr9:1574606 8.26E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00377 Cma_Chr09 FPKM 2.900139 3.140912 1.884656 1.714034 10.732169 11.504984 10.634924 1.682537 1.829226 1.892275