Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00387 ATGGTCTGCGAGATGGAGACTGAGGTTATTGAAGCTATGGACATCGAAGCTGTTCCTTCTATGTGGCCTGAGGACGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAAGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATACCTCGCAAAACAGTGGGAGTATAAGCAAGCGAATGCTGTGCGTCTCCTTAGAGAAGAACTTGACATCCTCAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTAGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTCATTCAAAGTAAGGGAGTTGAAATTGATGCAGCGTATGATACATTGACATACTGGAAGCAGCGAGCCATAGATCTGGAAAAACTGTTGGAAGCAAGCCTACAGCGCGAGCAGATGCTTGCAGAGAAGCTCAGGGAAAACATAAAAAATGTTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTGCTGCAGAATGCACCTGTGGTTTTTGGTCATCAGGACAAAGAAATGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAGATTTTTACTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTGCTAGACAAAGGGCTACCTGCAAAGAGGGAGATTCAGTTTGATACGGAATTATTTGGGCTTAAGACCTTTTTGATTTACGTTGAACCTGTCTTCAGCAAGGCTGGGGAAACAATTGGAATAAATTATGTGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGCGAGGAGATTGCAGTACAAAAAGCCAAGGAGTCAGAGCTGAACAAAACAATTCACATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGGTCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAGCGACATCTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTCGAGTCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTGAAGCATGTTCTGCAGACTGCTGCAGCATCATTGCGAAAATTCTTAGTTTTGGAGGGACGTATAGCAGATGATGTCCCTATAGAGGTCATCGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGTAACGCAATCAAGTTCACTCATCAAGGAAAGGTTGGAATTAACCTTTATGTGCTACCCTATCCACCCATCGGAAAAGGAGAAGAAAGCCCCAAGAAATCAACGGCTGATAACTCAACAGTTCCGGTAAATGGTTGGCAAGAAGGAACATGTCTTCCAGCCCCTCAGAATGACTTGCGTGGCCAGAAACACGGTGACAGAAATCACTTGCATTTTGATGCACCAGGAACCCCTAGTAAAAGTGAAACCACACAGAATGGAAATAGAGAAAACGAATCTTGTTCACCAGAAACAACGGTATGGATACGGTGTGATGTTTTCGACACAGGAATTGGAATACCAGAGAATGCATTACCAACCCTTTTTAAGAAGTACATGCAAGCTAGTGTCGATCATGCTCGCAAGTATGGAGGGACTGGACTTGGACTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCTACATTTACATTTGTTTTGCCATACAAGGTTTCGACCACTTGCAGTCCTTCCGATGATTCCGATGATCTCTCCGACGACGAGTCCACAAATGATGAAATGACCGAGGGCTTCTTCCAATTCCAACCCCACAGTTTCAGTTCTCTAGCATCTTCTAATGGCACAAGGATCATCCCAAACTCAATGTTACATACAACTGGGTATCACACCTCAACCAAACTCAATGGATTTTCTGAAGCTTCTTTTCCTATTCCCACAAACAACATCACACCACAAGAAACTGCTTCTCTTAGAGATGTCCCTTATGCCAATGCTGCTGCGGTAACCTCAAGCGAATCACAATGTTCATCGAGTCGGATGAACTCAGAGCTTGATAACGAAAACCAACCAGACACTAATGCTCGGTCCCAAAATGTTGGTGTGAATTCAGTTCACAGATCAGAAACAATGAAGCAAGAAAATGGATTGGAAAAGCCAAGTAATAAAATTCTAAAAACAGAACAGGGGAAGGAGAGATCCGATGATGGAAGTAACCATTGCAGAAGTAGCAGTAGTAGTGGTTCTGAAGTCACAATGGGATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTTACTCAATCCATGATGAAGAAGTTTGGCCAAAAAATCCACGTTGTAACTAACGGAATTGAGGCTGTTCGTGCAGTTCAACGCCGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCTGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCTGTAAATGCTGGAATCCAGCCAACTACGCCTTATTGGACTCCCTCCTCCAGCAGGATACCCATCGTTGCTATGACGGCAAATTCAATGTCAGAAAGCGCTGATGAGTGTTATGAAAATGGTATGGACTCGTTCGTATCAAAGCCAATCTCCTTCCAGAAGTTGAAAGAATGTCTGGAACGGTATTTACCACAACCTCCCTTGTAA 3006 42.58 MVCEMETEVIEAMDIEAVPSMWPEDVGPDVRKQFNVERPRADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVIQSKGVEIDAAYDTLTYWKQRAIDLEKLLEASLQREQMLAEKLRENIKNVEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKEMRYRFIYNHFPSLQEEDIIGRTDVEIFTGAGVKESQDFKKEVLDKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYVGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGKGEESPKKSTADNSTVPVNGWQEGTCLPAPQNDLRGQKHGDRNHLHFDAPGTPSKSETTQNGNRENESCSPETTVWIRCDVFDTGIGIPENALPTLFKKYMQASVDHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDDLSDDESTNDEMTEGFFQFQPHSFSSLASSNGTRIIPNSMLHTTGYHTSTKLNGFSEASFPIPTNNITPQETASLRDVPYANAAAVTSSESQCSSSRMNSELDNENQPDTNARSQNVGVNSVHRSETMKQENGLEKPSNKILKTEQGKERSDDGSNHCRSSSSSGSEVTMGLEPRILLVEDNKTNIMVTQSMMKKFGQKIHVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIQPTTPYWTPSSSRIPIVAMTANSMSESADECYENGMDSFVSKPISFQKLKECLERYLPQPPL 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1623094 1631212 + CmaCh09G003870.1 Cma09g00387 300392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00387 1001 MobiDBLite consensus disorder prediction 769 852 - -
Cma09g00387 1001 Gene3D - 336 434 - -
Cma09g00387 1001 SMART REC_2 857 992 IPR001789 GO:0000160
Cma09g00387 1001 ProSiteProfiles Response regulatory domain profile. 858 996 IPR001789 GO:0000160
Cma09g00387 1001 MobiDBLite consensus disorder prediction 549 590 - -
Cma09g00387 1001 MobiDBLite consensus disorder prediction 572 590 - -
Cma09g00387 1001 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cma09g00387 1001 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cma09g00387 1001 Gene3D - 855 996 - -
Cma09g00387 1001 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cma09g00387 1001 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cma09g00387 1001 Coils Coil 181 208 - -
Cma09g00387 1001 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 997 - -
Cma09g00387 1001 SMART HKATPase_4 482 672 IPR003594 -
Cma09g00387 1001 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cma09g00387 1001 Pfam Response regulator receiver domain 859 926 IPR001789 GO:0000160
Cma09g00387 1001 MobiDBLite consensus disorder prediction 769 810 - -
Cma09g00387 1001 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cma09g00387 1001 Coils Coil 92 112 - -
Cma09g00387 1001 Coils Coil 342 362 - -
Cma09g00387 1001 MobiDBLite consensus disorder prediction 811 839 - -
Cma09g00387 1001 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cma09g00387 1001 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cma09g00387 1001 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cma09g00387 1001 SUPERFAMILY CheY-like 857 997 IPR011006 -
Cma09g00387 1001 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cma09g00387 1001 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 997 - -
Cma09g00387 1001 Gene3D PAS domain 204 335 - -
Cma09g00387 1001 CDD REC_hyHK_CKI1_RcsC-like 859 992 - -
Cma09g00387 1001 Gene3D - 435 676 IPR036890 -
Cma09g00387 1001 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01683 Cma09g00387 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00387 Cma-Chr9:1623094 Cma04g00016 Cma-Chr4:74939 2.16E-16 dispersed
Cma01g01683 Cma-Chr1:11482122 Cma09g00387 Cma-Chr9:1623094 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35606 PF02518 HATPase_c 3.00E-27 CL0025 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00387 - - csv:101219807 1687.55