Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00389 ATGCTGATCCAACAAACCAACATCCCAAAAAGTGCAACAAAATCCTCCCCTGTTTCGTTGTCTCCCTTAAACGCTTCTTCTTCTTCTTCTTCTTCCACCAGGGTTGTGGTTGTGGTTGTGGATATAATTTCAGGTTCCGGTTTGATTTCGGCGGTTCCGCGGGCATTCGAGGAACGCCTTGTTCCTTCCACTTCTGTAACCATAGCTTCTAGAACTTGTTTGTTAGTTTTATTTTTTCTTTGTTCCATTTTGATCGAAGGGATTGGAGCTGGCTATGTTCAGAGCCTAGACAACATGGGCTATCTGGATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTTAGCGGCGGGGGACTTAGTCAGAATGGAAAGTTCAGCTATGGATATGCTAGCTCTCCAGGAAAGAGATCTTCGATGGAAGATTTTTACGAGACACGAATCGACGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTCGACGGTCATGGCGGAGCACGAGCGGCGGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCAGATACCAAATCTGCTATAGCCGATGCATACAACCACACAGACACGGAATTTCTGAAGTTGGAAAATAATCAAAACAAAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGTTTACTTGTTGCAAATGTTGGTGACTCTAGAGCTGTTATTTCCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATCGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTCTCACGTGCATTTGGGGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAGATTCTTATACTTGCAAGCGATGGACTGTGGGACGTCGTCTCTAACGAGGAAGCTGTAGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCAAAGAGGTTGTTACAAGAAGCATATCAGAGAGGCAGTGCCGATAACATTACTTGTGTCGTCGTCCGTTTCTTGGCGAATCAAGGAAGTTCCTCAGGGTAA 1164 45.88 MLIQQTNIPKSATKSSPVSLSPLNASSSSSSSTRVVVVVVDIISGSGLISAVPRAFEERLVPSTSVTIASRTCLLVLFFLCSILIEGIGAGYVQSLDNMGYLDSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDTEFLKLENNQNKDAGSTASTAILVGDRLLVANVGDSRAVISRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEILILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLLQEAYQRGSADNITCVVVRFLANQGSSSG 387
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1640856 1646065 - CmaCh09G003890.1 Cma09g00389 300394
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00389 387 Pfam Protein phosphatase 2C 161 371 IPR001932 -
Cma09g00389 387 ProSitePatterns PPM-type phosphatase domain signature. 163 171 IPR000222 GO:0043169
Cma09g00389 387 ProSiteProfiles PPM-type phosphatase domain profile. 132 378 IPR001932 -
Cma09g00389 387 CDD PP2Cc 131 378 IPR001932 -
Cma09g00389 387 PANTHER ALPHABET, ISOFORM E-RELATED 102 385 - -
Cma09g00389 387 Gene3D - 124 383 IPR036457 -
Cma09g00389 387 SMART PP2C_4 122 376 IPR001932 -
Cma09g00389 387 SUPERFAMILY PP2C-like 126 378 IPR036457 -
Cma09g00389 387 MobiDBLite consensus disorder prediction 1 28 - -
Cma09g00389 387 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 102 385 - -
Cma09g00389 387 SMART PP2C_SIG_2 143 378 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02414 Cma-Chr4:16659574 Cma09g00389 Cma-Chr9:1640856 1.66E-123 dispersed
Cma09g00389 Cma-Chr9:1640856 Cma18g01303 Cma-Chr18:10027315 2.14E-121 dispersed
Cma16g00257 Cma-Chr16:1214713 Cma09g00389 Cma-Chr9:1640856 3.31E-63 dispersed
Cma17g00256 Cma-Chr17:1316673 Cma09g00389 Cma-Chr9:1640856 5.58E-21 dispersed
Cma17g01008 Cma-Chr17:7344665 Cma09g00389 Cma-Chr9:1640856 8.57E-37 dispersed
Cma01g01681 Cma-Chr1:11465044 Cma09g00389 Cma-Chr9:1640856 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00389 K17506 - csv:101216117 553.132