Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00389 | ATGCTGATCCAACAAACCAACATCCCAAAAAGTGCAACAAAATCCTCCCCTGTTTCGTTGTCTCCCTTAAACGCTTCTTCTTCTTCTTCTTCTTCCACCAGGGTTGTGGTTGTGGTTGTGGATATAATTTCAGGTTCCGGTTTGATTTCGGCGGTTCCGCGGGCATTCGAGGAACGCCTTGTTCCTTCCACTTCTGTAACCATAGCTTCTAGAACTTGTTTGTTAGTTTTATTTTTTCTTTGTTCCATTTTGATCGAAGGGATTGGAGCTGGCTATGTTCAGAGCCTAGACAACATGGGCTATCTGGATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTTAGCGGCGGGGGACTTAGTCAGAATGGAAAGTTCAGCTATGGATATGCTAGCTCTCCAGGAAAGAGATCTTCGATGGAAGATTTTTACGAGACACGAATCGACGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTCGACGGTCATGGCGGAGCACGAGCGGCGGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCAGATACCAAATCTGCTATAGCCGATGCATACAACCACACAGACACGGAATTTCTGAAGTTGGAAAATAATCAAAACAAAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGTTTACTTGTTGCAAATGTTGGTGACTCTAGAGCTGTTATTTCCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATCGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTCTCACGTGCATTTGGGGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAGATTCTTATACTTGCAAGCGATGGACTGTGGGACGTCGTCTCTAACGAGGAAGCTGTAGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCAAAGAGGTTGTTACAAGAAGCATATCAGAGAGGCAGTGCCGATAACATTACTTGTGTCGTCGTCCGTTTCTTGGCGAATCAAGGAAGTTCCTCAGGGTAA | 1164 | 45.88 | MLIQQTNIPKSATKSSPVSLSPLNASSSSSSSTRVVVVVVDIISGSGLISAVPRAFEERLVPSTSVTIASRTCLLVLFFLCSILIEGIGAGYVQSLDNMGYLDSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDTEFLKLENNQNKDAGSTASTAILVGDRLLVANVGDSRAVISRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEILILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLLQEAYQRGSADNITCVVVRFLANQGSSSG | 387 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1640856 | 1646065 | - | CmaCh09G003890.1 | Cma09g00389 | 300394 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00389 | 387 | Pfam | Protein phosphatase 2C | 161 | 371 | IPR001932 | - | |
| Cma09g00389 | 387 | ProSitePatterns | PPM-type phosphatase domain signature. | 163 | 171 | IPR000222 | GO:0043169 | |
| Cma09g00389 | 387 | ProSiteProfiles | PPM-type phosphatase domain profile. | 132 | 378 | IPR001932 | - | |
| Cma09g00389 | 387 | CDD | PP2Cc | 131 | 378 | IPR001932 | - | |
| Cma09g00389 | 387 | PANTHER | ALPHABET, ISOFORM E-RELATED | 102 | 385 | - | - | |
| Cma09g00389 | 387 | Gene3D | - | 124 | 383 | IPR036457 | - | |
| Cma09g00389 | 387 | SMART | PP2C_4 | 122 | 376 | IPR001932 | - | |
| Cma09g00389 | 387 | SUPERFAMILY | PP2C-like | 126 | 378 | IPR036457 | - | |
| Cma09g00389 | 387 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cma09g00389 | 387 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 102 | 385 | - | - | |
| Cma09g00389 | 387 | SMART | PP2C_SIG_2 | 143 | 378 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02414 | Cma-Chr4:16659574 | Cma09g00389 | Cma-Chr9:1640856 | 1.66E-123 | dispersed | |
| Cma09g00389 | Cma-Chr9:1640856 | Cma18g01303 | Cma-Chr18:10027315 | 2.14E-121 | dispersed | |
| Cma16g00257 | Cma-Chr16:1214713 | Cma09g00389 | Cma-Chr9:1640856 | 3.31E-63 | dispersed | |
| Cma17g00256 | Cma-Chr17:1316673 | Cma09g00389 | Cma-Chr9:1640856 | 5.58E-21 | dispersed | |
| Cma17g01008 | Cma-Chr17:7344665 | Cma09g00389 | Cma-Chr9:1640856 | 8.57E-37 | dispersed | |
| Cma01g01681 | Cma-Chr1:11465044 | Cma09g00389 | Cma-Chr9:1640856 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00389 | K17506 | - | csv:101216117 | 553.132 |