Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00391 ATGGCGCCTCTTTCTTCAATGCTTCTCTTTGCTTTTTGTTTCTTTTTCTTTCACTCTTCCGCCGGGAAAGTCTCGCCGGACGCCCACCGCCTCACCGTCGAACTCGCCGACCTTCTGCCGTCCGCTGCCTGCAACCGCCGCTCCGTTCAAGCCCAAATTTCAGGTGGGAGAACGCAGTCATCACTGGAGGTGATTCACCGGCACGGGCCATGCGGCGACGGAAATTCGAAAGCACCGACGGCCGCCGAATTATTCGTTCAAGATCAGGCTCGAGTGGATTTCATCCACTCGAAATTCTCAGGGGACTTCAAATCCATTGATCGTTTACGGCCGTCGAAGGCCACGAAAATCCCGGCGAAGTCCGGCGCCACCATCGGGTCCGGGAATTACATAGTGAACGTGGCTCTGGGGACGCCGAAGAAGTACTTGTCGCTTATATTTGACACTGGCAGCGATCTGACGTGGACTCAGTGCGCGCCGTGCGCCAGATATTGCTACAGCCAGAAGGACCCTGTTTTCGCCCCTTCCCAATCCACCACTTATTCCAACATCACTTGTTCTTCGCCTATCTGCTCTCAGCTTGAATCGGGCACCGGGAACCAACCTGGTTGCTCCGCTGCGAAATCCTGCATTTACGGAATACAATACGGCGATCAATCTTTCTCCGTCGGATATTTCGCCAAAGAAACCTTAACCTTGACGCCCACCGATGTTATCAGCAATTTCCTCTTCGGTTGCGGCCAAAACAACCGTGGACTCTTTGGCAGCGCCGCCGGTCTCATCGGCCTTGGCCAGGACAAAATCTCCATCGTCAAACAGACGGCCCAAAAGTACGGTCAGATCTTCTCCTACTGCCTCCCTAAAACCTCAAGCTCCACCGGCTACCTAGCCTTCGGCGGCAGTGGCGGTGGCGGCGGTGCTCTGAAATACACGCCGATCACAAAAGCACACGGCGTCGCGAATTTCTATGGCGTCGACATCGTCGGTATGAAGGTCGGAGGAATTCAGATCCCGATCTCGGCGTCGGTCTTCTCGACTTCCGGCGCGATCATCGATTCCGGCACGGTGATTACGCGGCTGCCGCCAGATGCGTACAGCGCCTTGAAATCGGCGTTTCAGAAAGGAATGACGAAGTATCCAAAGGCGCCGGAGCTTTCGATTCTGGACACGTGTTACGATCTGAGCAAATACACCTCTGTAGAGATCCCGAAAGTGGATTTTCTTTTCAAAGGAGGAACGGTACTCGAACTGGACGGCACCGGAATCTTGTACGGAGCATCGACGACTCAGGTCTGTTTAGCATTCGCCGGAAATCTGGATCCGAGCTCCGTCGCCATTATTGGGAACGTGCAGCAGAAAACTATGCAGAACCATCAGAGAAAATCCCCCGACGCCGAAGATTGGATCTCCGAGTCCATCAACGGTGGATCCTTACGCCACGTCGACCTGCAGACTGGAACCAACGGCTGGGCTTCGCCTCCCGGCGATCTTTTCTCCATCCGCTCCAAAAACTACTTCACGAAACGGCAAAAATCGCCTGCCGGCGATTATTTGCTTTTTCCTGCCGGCATGGACTGGCTGAAATCAACTTCCAAACTGGAAAACGTTTTGGCGCGTGAAGACAATCGCTTGTCTTTATCTCTCCTTCGAGCACAAGCGGAAGGAAAATCGCTGAAGAGCTTCATTTTCGCCGTGAATCTTCAAATCCCCAGCAATATTGACCAATACAGCGCCGTGTTCTATTTCGCCACCGAAGATCCGATCCCGACTGGTTCGCTTCTCCACCGGTTCATCCACGAGGACGATGCCTTCAGAAACGAGCGGTTCAAGATCGTGAACCGGATCGTAAATGGACCGTGGATTGTGAAGAAAACCGTCGGAAATTACAGCGCCTGTTTGCTCGGAAAGGCGTTAGCGTGCAGTTATCACAAAGGTACGAATTACTTTGAGATCGATGTCGATATCGGGAGCTCGGCGTTGGCATGCGCGATTCTGCGATTGACATTGCTTTACGTGAATTCCGTAACGATCGACATGGGATTTCTGGTCGAGGCAGTTACGGAGGATGAGTTGCCGGAGAGATTAATCGGCGCCGTTAGGGTTTCTCAGATCGAGATGGAAGCGGCGGCGGTGGTAGAATCGGTTACTGGACCGCCGCGTCCGTTAGAGAACGGTAAGGTGGATCAACTGCTGAAGTCGAGCAACGACGATTCTGAAGAAAAAATTTGTGATACAATAAATGAAATTCTTCGGATTGAAGATTCTGCAAACGTAATAAAAGCATGA 2286 52.67 MAPLSSMLLFAFCFFFFHSSAGKVSPDAHRLTVELADLLPSAACNRRSVQAQISGGRTQSSLEVIHRHGPCGDGNSKAPTAAELFVQDQARVDFIHSKFSGDFKSIDRLRPSKATKIPAKSGATIGSGNYIVNVALGTPKKYLSLIFDTGSDLTWTQCAPCARYCYSQKDPVFAPSQSTTYSNITCSSPICSQLESGTGNQPGCSAAKSCIYGIQYGDQSFSVGYFAKETLTLTPTDVISNFLFGCGQNNRGLFGSAAGLIGLGQDKISIVKQTAQKYGQIFSYCLPKTSSSTGYLAFGGSGGGGGALKYTPITKAHGVANFYGVDIVGMKVGGIQIPISASVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMTKYPKAPELSILDTCYDLSKYTSVEIPKVDFLFKGGTVLELDGTGILYGASTTQVCLAFAGNLDPSSVAIIGNVQQKTMQNHQRKSPDAEDWISESINGGSLRHVDLQTGTNGWASPPGDLFSIRSKNYFTKRQKSPAGDYLLFPAGMDWLKSTSKLENVLAREDNRLSLSLLRAQAEGKSLKSFIFAVNLQIPSNIDQYSAVFYFATEDPIPTGSLLHRFIHEDDAFRNERFKIVNRIVNGPWIVKKTVGNYSACLLGKALACSYHKGTNYFEIDVDIGSSALACAILRLTLLYVNSVTIDMGFLVEAVTEDELPERLIGAVRVSQIEMEAAAVVESVTGPPRPLENGKVDQLLKSSNDDSEEKICDTINEILRIEDSANVIKA 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1649823 1654650 - CmaCh09G003910.1 Cma09g00391 300396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00391 761 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 490 705 IPR009769 -
Cma09g00391 761 Gene3D Acid Proteases 106 299 IPR021109 -
Cma09g00391 761 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190|GO:0006508
Cma09g00391 761 PANTHER ASPARTYL PROTEASES 49 456 IPR001461 GO:0004190|GO:0006508
Cma09g00391 761 Gene3D Acid Proteases 305 457 IPR021109 -
Cma09g00391 761 SUPERFAMILY Acid proteases 124 455 IPR021109 -
Cma09g00391 761 CDD cnd41_like 129 456 IPR033873 -
Cma09g00391 761 Pfam Xylanase inhibitor C-terminal 323 455 IPR032799 -
Cma09g00391 761 PANTHER ASPARTYL PROTEASE AED1 49 456 - -
Cma09g00391 761 ProSiteProfiles Peptidase family A1 domain profile. 130 472 IPR033121 -
Cma09g00391 761 Pfam Xylanase inhibitor N-terminal 130 300 IPR032861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00391 - - - csv:101215397 758.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00579 Cma-Chr8:3314591 Cma09g00391 Cma-Chr9:1649823 3.45E-77 dispersed
Cma09g00391 Cma-Chr9:1649823 Cma17g00911 Cma-Chr17:6869316 1.81E-77 dispersed
Cma14g01515 Cma-Chr14:11476130 Cma09g00391 Cma-Chr9:1649823 6.90E-61 dispersed
Cma16g01207 Cma-Chr16:9154328 Cma09g00391 Cma-Chr9:1649823 2.99E-49 dispersed
Cma12g00373 Cma-Chr12:1928110 Cma09g00391 Cma-Chr9:1649823 1.15E-131 wgd
Cma05g00340 Cma-Chr5:1488732 Cma09g00391 Cma-Chr9:1649823 9.70E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma09g00391 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00391 Cma_Chr09 FPKM 75.515106 79.149452 130.310272 134.731659 55.434738 43.391483 46.957932 4.870863 3.302927 2.435618