Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00393 ATGGCCTCTCTCCGCCCATTTCTTTCCATTTCCCCTTTCTCCCGCGCACCTAAGCGCACGCACTTCGCGAATGTCCTTAACGCTCCATCGCCTTCCGCTTCCTCTTTGCCGTTCAAATTAGTCGCCGCCAGAAAGAGATTCGTGGTTCGCGGCGACGCCGTTGTAGACGCCGGAACTGCAGCTTCAATCGGCGATCTGAAGGACGATGATAATCAGGCGGTCATTTTGGGTCCGACGACCGATGAGGAGCTTAGCGGTGGATCTACGGTGGAGTACGACTGGACTGAAGAGTGGTACCCGCTGTACCTTACGCGAGATGTGCCGGAGGATGCTCCTTTAGGGCTCACTGTGTTCGATAAGCAGTTGGTTCTGTACCGCGATGGATCCGGCGAGCTCCGATGTCACGAAGACAGGTGCCCCCATAGGCTAGCAAAGCTCTCTGAAGGCCAATTAATCGATGGCAAACTGGAATGTCTTTACCATGGCTGGCAATTTGAAGGCGAGGGGAAATGTGTGAAGATTCCTCAGCTTCCTTCAGATGCCAAGATTCCTAGATCAGCATGTCTAAGAACATACGAGGTAAGGGACTCACAGGGAGTTGTATGGGTGTGGATGTCTTTGGAAAAGCCTCCAACCCTCAAAAAGATACCATGGTTCGACAACTTCGAGCGGCCCGGGTTCCGAGACAATTCGACCATTCACGAGCTTCCTTATGATCACTCCATACTTCTTGAGAACCTTATGGATCCTGCACATGTACCTATCTCCCATGATAGAACAGATTTTAGTGCCAGAAGGGAAGATGCTCAGCCATTAGGATTCGAAGTTACCGAGCGTACGAACCGTGGTTTCGCTGGTCGATGGGGCCGTTCTAAAGAACAAGCATTGTCAAACTTCTTAAGGTTTGAAGCTCCTTGTGTCCTTCAGAATAACAAGGAAATTCCCAATGAAAAAGGTGCTGTGGATTACTTTACGGGACTTTTCCTCTGTAGGCCTACAGGCCAGGGGAAGTCCATGCTTATAGTGAGATTTGGTAGCACAAGATCTTCCTTTCTGTGGAAATTTCTGCCTTCATGGTTTCTCCACCAAAATGCCTGCAAGGTTTTTGAGCAAGATATGGGATTTCTTTCATCCCAAAATGAGGTTCTAATTAGAGAAAAAGTGCCCACCAAAGAGCTCTACCTCAACTTACGATCTTCCGATACTTGGGTTCTCGAGTATCGACGCTGGATGGACAAGGTCGGGCACGGGATGCCGTATTACTTCGGACATGCTACAATTTCGTTGCCTAAACTGCCTGCTGTTGTTGAACACGCCCCGGTAGGACTAGTTGCTGGAGCTTCAGCATCTGCTCCGGCTAAGGGGGGGATCGGCACGATGCATTCTCCGAACTTGTCGAACCGATACTTTCGACATATCATTCATTGCAGGAGTTGTAGCAATGTCATCAAATCTTTTCAAACTTGGAACAAGGCTCTTTCTGCCATTGCCGTCACTTTGGTTGCGTTAGCCATTTTGGTGAGTGGAAGGCAATGGAAGGCGCTCATTCTGTTGTCTGCAGCATTGTGCTATGGTGGAGCTTATGCATGCTCGGCTATTGTGGCACTAAATACCACTAATTTTATAAGAACTCACAGAAGGTTGTAA 1647 48.94 MASLRPFLSISPFSRAPKRTHFANVLNAPSPSASSLPFKLVAARKRFVVRGDAVVDAGTAASIGDLKDDDNQAVILGPTTDEELSGGSTVEYDWTEEWYPLYLTRDVPEDAPLGLTVFDKQLVLYRDGSGELRCHEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFDNFERPGFRDNSTIHELPYDHSILLENLMDPAHVPISHDRTDFSARREDAQPLGFEVTERTNRGFAGRWGRSKEQALSNFLRFEAPCVLQNNKEIPNEKGAVDYFTGLFLCRPTGQGKSMLIVRFGSTRSSFLWKFLPSWFLHQNACKVFEQDMGFLSSQNEVLIREKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGHATISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMHSPNLSNRYFRHIIHCRSCSNVIKSFQTWNKALSAIAVTLVALAILVSGRQWKALILLSAALCYGGAYACSAIVALNTTNFIRTHRRL 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1662920 1665348 + CmaCh09G003930.1 Cma09g00393 300398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00393 548 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 98 203 IPR017941 GO:0051537
Cma09g00393 548 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 66 548 - -
Cma09g00393 548 Gene3D - 93 221 IPR036922 GO:0051537
Cma09g00393 548 Gene3D - 225 416 - -
Cma09g00393 548 SUPERFAMILY Bet v1-like 199 417 - -
Cma09g00393 548 SUPERFAMILY ISP domain 91 211 IPR036922 GO:0051537
Cma09g00393 548 Pfam Rieske [2Fe-2S] domain 97 179 IPR017941 GO:0051537
Cma09g00393 548 Pfam Pheophorbide a oxygenase 302 386 IPR013626 GO:0010277
Cma09g00393 548 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 66 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00393 - - - csv:101212085 905.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02363 Cma-Chr4:16377346 Cma09g00393 Cma-Chr9:1662920 2.19E-24 dispersed
Cma09g00393 Cma-Chr9:1662920 Cma13g00262 Cma-Chr13:2163188 1.26E-53 dispersed
Cma09g00393 Cma-Chr9:1662920 Cma11g00789 Cma-Chr11:3859448 1.85E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g610 Blo01g01424 Blo12g01041 Bda01g00654 . . Bpe02g00226 . Bma01g02181 . . . . Car09g00342 . . . Cpe06g00281 . . . . . . . Cla05g01660 Cam05g1771 Cec05g1779 Cco05g1838 Clacu05g1761 Cmu05g1647 Cre05g1775 Cone4ag1731 Cone7ag1650 . . Lsi04g01356 . . . . . . . . Bpe04g00097 . . Sed13g1947 . Cmo09g00395 Cma09g00393 . . . . . Bhi09g03043 Tan01g3529 Cmetu07g0445 . Hepe01g1944 Mch11g0480 . . . . . . . . . . . Cme07g00144
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009854 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00393 Cma_Chr09 FPKM 3.889157 3.870155 31.737656 32.217533 49.664795 51.698559 46.541733 27.128319 27.436056 26.700514