Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00398 ATGGAGAAGGGCAAAGGATTGATGGTGGACGGCCGGCGATGGGCCGTTGATTTCTCCGACAATTCTTCGTCGAACTCGACTCGCGACATTGTTGATCCTCCTGGTTTCACCCGTGCTTCTCAAGATCAGGACGATTCGACTCTCAGCCGCCAAAAGAAGGATGCCGAATCCAATTGGAAGGCACAGAAAGCTTGGGAAGTGGCCCAGGCGCCTTTGAAGAATTTGTTCATGATGGGCTTCATGATGTGGATGGCTGGTCGCACTGTTCATTTATTTAGCATTGGTATCACATTTTCAGCTCTTTGGCAACCCATAAGCGCCCTGCAAGGCGTTGGAAAGGTCTTTGAGCCTTACAAGGACAGTAAAGTAGATCTTCTTGGACCTAAGTTGCTGTTTATTGCCCTTAACCTCGGAGGCTTAGCATTAGGTGTTTGGAAGCTTAACACTTTGGGGCTTCTGCCAACTCATGTATCCGACTGGGTTTCGTCTCTACCGCCTGCACAGATACAAATCTGTGGTTCTGTGCATCTCTTTTTGAGCATGTTTCAAAGAAACCCATCTTATTCTAACCCAACACCATGCAATCATCTAGCTGATTACAAGCTCAGATATGGCTTAAACGGCTATAAATCCTTTCAAAATCACCTTAAAACTACCCCAAATGGAAGAACTAGTATTCAAAACCCCGATTCGAAGCTACCCAGATGCGGTTCTTGCGATGGGTATGAAGGGAGGCTCTACATATGCTTGATTTGTGCTTCAATCTCTTGCTCAAATCATACCCTTCTTCACAACCAGTCCGAAAACGGCCATGATTTGGCCGTCGACGTTGAGAGAGCGGAGCTTTATTGTTATGCTTGCTCCGATCAGGTTTACGACCCTGATTTTGATCGGACGGTGATGTCGAAGCACATCGTCGCCGCCGTACTGGAGAAATCGCAATCGGCGGAGAGATCGAGTAAGAGGAGGAGATTTGGATCGATAGATTTATTGGATTTGAAGAAATTGAAACCGTTGATGTCTGTTAAAGATCAGCGGTCGAAATCGTGCTATCCTTTGGGATTGAGGGGATTGAATAACTTGGGGAATACTTGTTTTATGAACTCTGTTCTTCAAGTGTTTCTTCATACTCCGCCTTTGAGCAATTACTTCTTGAATGATCAGCACAACAGGGAAACTTGCAGCAAAAGACCCATTGGGCAGCTGTGTTTACCTTGTGACATTGATCGTATTTTTTCTGCTGTGTTTTCTGGTGATCATATGCCTTATAGTCCAGCTCAATTTCTTTACAGAGAATGGGGACTGCAAATGCATTGCTCACAAGGCCTTCTCTGGGCAGTTGAGATCAGACGTGACCTAAATATTGCTAGCAAGTCGACGAAGCCCGTGGATTCCAGCAGTAAATCTACGCTATCTGGTTGTTTGGATCTTTTTACGAGACCCGAAAAGCTGGGATCGGACCAGAAACTTTTCTGCCAGAATTGTCAAGAAATGAGAAGTTCAGTGAAGCAAATGTCTATCAGAAGGCTGCCATTGGTCTTGTGTTTGCATATCAAACGATTCGAGCACTCTTTTGTCAGACGAACGTCGAGAAAAATTGATCGGTATTTGCAGTTTCCTTTCTCCCTCGACATGATCCCGTATTTGTCGTCTTCGATTATCAGAAACAGATATGGGAATAGGATTTTTGCTTCTGAGGGAGATGAAATAGATGCTTCGTCGAAGTTTGAGATTTTCGCTGTGGTTTCTCATTCGGGGACGCTCGAGTCTGGTCATTATGTGACATACTTGCGTCTGAGAAGTCAATGGTATAAGTGTGACGATGCCTGGATCACCGAAGTCGATGAGGAAATGGCAGCGCCAGAATTTCGTCACAGGGAACGTGATGTTAAGCTGGTCGCTAAGGCTCAAACGGCAGGACGATATGATATCGAAATATCGAAAACGTTGTGGATTGGTATCTTGAAAGATGAAGATGGGTACTACAAATTGGTCATGTTTCATCATGGATTTAGAATTCTGAGGGATTTTGATCAGGCAGGGTTGCATGGAGATAATGTAGAAGTTCCTCTTGCAATGAATACCTAG 2088 44.78 MEKGKGLMVDGRRWAVDFSDNSSSNSTRDIVDPPGFTRASQDQDDSTLSRQKKDAESNWKAQKAWEVAQAPLKNLFMMGFMMWMAGRTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQIQICGSVHLFLSMFQRNPSYSNPTPCNHLADYKLRYGLNGYKSFQNHLKTTPNGRTSIQNPDSKLPRCGSCDGYEGRLYICLICASISCSNHTLLHNQSENGHDLAVDVERAELYCYACSDQVYDPDFDRTVMSKHIVAAVLEKSQSAERSSKRRRFGSIDLLDLKKLKPLMSVKDQRSKSCYPLGLRGLNNLGNTCFMNSVLQVFLHTPPLSNYFLNDQHNRETCSKRPIGQLCLPCDIDRIFSAVFSGDHMPYSPAQFLYREWGLQMHCSQGLLWAVEIRRDLNIASKSTKPVDSSSKSTLSGCLDLFTRPEKLGSDQKLFCQNCQEMRSSVKQMSIRRLPLVLCLHIKRFEHSFVRRTSRKIDRYLQFPFSLDMIPYLSSSIIRNRYGNRIFASEGDEIDASSKFEIFAVVSHSGTLESGHYVTYLRLRSQWYKCDDAWITEVDEEMAAPEFRHRERDVKLVAKAQTAGRYDIEISKTLWIGILKDEDGYYKLVMFHHGFRILRDFDQAGLHGDNVEVPLAMNT 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1681868 1691085 + CmaCh09G003980.1 Cma09g00398 300403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00398 695 SMART Zf_UBP_1 235 282 IPR001607 GO:0008270
Cma09g00398 695 Gene3D Cysteine proteinases 448 636 - -
Cma09g00398 695 MobiDBLite consensus disorder prediction 17 31 - -
Cma09g00398 695 Pfam Protein of unknown function (DUF1077) 52 164 IPR009445 -
Cma09g00398 695 SUPERFAMILY RING/U-box 192 297 - -
Cma09g00398 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 314 IPR013083 -
Cma09g00398 695 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 453 618 - -
Cma09g00398 695 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 357 372 IPR018200 GO:0004843|GO:0006511
Cma09g00398 695 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 185 434 - -
Cma09g00398 695 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 453 618 - -
Cma09g00398 695 Pfam Ubiquitin carboxyl-terminal hydrolase 357 396 IPR001394 GO:0004843|GO:0016579
Cma09g00398 695 Gene3D Cysteine proteinases 339 442 - -
Cma09g00398 695 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 185 434 - -
Cma09g00398 695 SUPERFAMILY Cysteine proteinases 352 621 IPR038765 -
Cma09g00398 695 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 356 636 IPR028889 -
Cma09g00398 695 Pfam Zn-finger in ubiquitin-hydrolases and other protein 236 295 IPR001607 GO:0008270
Cma09g00398 695 ProSiteProfiles Zinc finger UBP-type profile. 211 316 IPR001607 GO:0008270
Cma09g00398 695 Pfam Ubiquitin carboxyl-terminal hydrolase 487 618 IPR001394 GO:0004843|GO:0016579
Cma09g00398 695 MobiDBLite consensus disorder prediction 17 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00398 K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] - cit:102618157 556.599
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01677 Cma09g00398 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00398 Cma-Chr9:1681868 Cma16g01159 Cma-Chr16:8895495 6.35E-19 dispersed
Cma05g01265 Cma-Chr5:9667731 Cma09g00398 Cma-Chr9:1681868 5.44E-59 transposed
Cma01g01677 Cma-Chr1:11445579 Cma09g00398 Cma-Chr9:1681868 2.12E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g599 Blo01g01421 Blo12g01043 Bda01g00657 Bda03g00109 . Bpe02g00530 Bma04g00101 Bma01g02177 . . Cma01g01677 . Car09g00346 . . . Cpe06g00285 . . . . . . . Cla05g01665 Cam05g1779 Cec05g1785 Cco05g1845 Clacu05g1768 Cmu05g1652 Cre05g1781 Cone4ag1736 Cone7ag1655 Cone17ag0971 Cone20ag0313 Lsi04g01350 . . . . . . . . Bpe04g00093 . . Sed05g1760 Cmo01g01727 Cmo09g00399 Cma09g00398 . Car01g01292 . . Cpe02g00314 Bhi09g03037 Tan01g3535 Cmetu07g2294 . Hepe01g1950 Mch11g0486 . . . . . . . . . . . Cme07g00138
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00398 Cma_Chr09 FPKM 7.655838 11.138853 11.621132 12.528861 10.651582 8.521991 10.34847 12.932415 11.831275 12.282291