Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00399 ATGGGTACCCAAACTATTCCAAGCCATGAACGCTCCAGAACATATTGGACACCAGTAATGGAACGTTACTTCATTGATCTTATGTTGGAGCAGCTTCACAGAGGAAACAGGAGTGGGCACACTTTCAACAAGCAGGCATGGACGGACATGCTTACAATGTTTAATACAAAATTTGGATCTCAGTATGATAAAGACGTTTTGAAGAGTCGCTATACAAATCTGTGGAAGCAATTCAATGATGTTAAGCATCTATTAGGTCATGATGGTTTTTCGTGGGACGAAGGTCGACAAATGGTAATTGCTGATGATCATGTATGGGACATTTACATCCAGGTGCATCCAGATGCACGATCCTATAAAACTAAAGCGGTACTGAACTTTAGCGATTTGTGTCTGATATATGGATACACTAATGCTGATGGAAGATACAGTCGATCGAGTCACGATATAGACTTTGATGATGAAATCCAAGCTGTAAATACAGGTGATGCCATTGGTTGCGTTGCCCCTCCTGATCGTCCAAGGACGGATTGGACGCCCGAAATGGATCAGTATTTCATTGAGCTTATGCTAGACCAAGTAGGAAGAGGCAATAAGGTGTCGAATACTTTCAATAAGCAAGCGTGGACAGATATGCTTGCATTGTTTAATGCTAAATTTGGTCCGCAACATGGTAAAAGGGTGTTACGACATCGATTTAAGAAATTATGGAAATATTACTGTGATATTATGAATCTACTTCAACAAAATGGATTTTGCTGGGATGAAGTACAACAAATGGTTGTGGCTGATGATGATATTTGGGATGCTTATGTCAAGACGCACCCGTTTGCACGAAGTTATAGAACGAAAGAGTTGCCGAACTACTATGACTTGGTTCTCATATATGGGAATGTAATTGATAGTGAGAACCAGAATCATTTGCATCTAGATAAGAACCTTCCAAACGATATATCAGAGGAGAATCAAATGCCAACTGTCAGCGACCGCACCCGAACATATTGGACGCCCCCAATGGATCGTTACCTCATAGACTTGCTACTTGAACAGGTGAATAGGGGCAATAAAATAGGCCAAACGTTTGTAAGTCATGCTTGGATCGACATGGTTACCACTTTCAATGCCCAATTCAGAGCTCACCATGACAAGGATGTGCTGAAAAATCGATACAAACATTTGAGAAGGTTGTATAATGAAATAAAGATTCTTCTCGAACAGAGAGGATTTTCATGGGATGAAAATCGTGAAATTGTTACTGCTGACGACCATGTTTGGGATGCTTATACCAAGGATCACCCTGTTGCCCGATCATATAGAGTCAAAACTGTACCAAGCTATCACAAGTTGTGTTTTATATTTGGTGAAGAGAGTTCTGACAGAAGATATAGCCGTTTGGCCCATGATACCGATCCGAGTAATGAAGTGCCTGTTCTTATGACTGATGAAAGGAAAAATGATCAAGTTCCTGCTGGACCTTCACCCATGATAGATTGGACACCACAGATGGATCGCGCTTTTATCGATCTTATGCTTGAACATTCGCAAGAAGGAAGTATGTTCAGTCAAGCGTTTAGCGAGCAAGCATGGAGTCACGTGATTATATCATTCAATGAGAGGTTCAAACTTCAATGTGGCCGATCTGTTCTAGAAGATCGTTATTTATGGTGGATGAAGCAATATGGCGAAATCTACAATCTTCTCAATCACGGTGGGTTCATGTGGAATGAATCTCAACAATTGATTACTGCTGAGGATGATCTCTGGGAAGCCTATGGAAAGGAACGCCCCGATGCCCTCTTGTACAAAGACAAATTCCTCGGCTACTATACTGACTTGTGCAAGATTTTCGGAAACGTAATAGATAAAGAAGTCAACAGTCGGTATACAGGTGAAATCGATAACGAAAATATGGAGATAAAGATGGATGGAAATGAACAACATCTACTCCTAACATCAAGAGAGTTCCAAATTTCTCAGCAGAGAAAGCGTCCTGCAGAGATGATATCATTGGACACGGAGCTGTCGAAGAAAGTGCATAGAACCGAGAACGACGTGCAGAAAGCTCTGTCCGAGATGGCAGGTGTAGTCACTAGATTGGTGAGCATGAGACAGCACCATAACTATAAAGCAGGCGAAGGAGCCATCGATGCGCTTCAGGCTATACCCGACATCGATGACGAACTTATGTTGGATGCCTGTGATCTCTTAGAAGATGAAAGGAAGGCAAAAACATTTATGGCTTTGGATGCAACCCTGCGAAAGAAATGGTTACTAAGAAAGCTTCGTTCTCAATAG 2295 41.61 MGTQTIPSHERSRTYWTPVMERYFIDLMLEQLHRGNRSGHTFNKQAWTDMLTMFNTKFGSQYDKDVLKSRYTNLWKQFNDVKHLLGHDGFSWDEGRQMVIADDHVWDIYIQVHPDARSYKTKAVLNFSDLCLIYGYTNADGRYSRSSHDIDFDDEIQAVNTGDAIGCVAPPDRPRTDWTPEMDQYFIELMLDQVGRGNKVSNTFNKQAWTDMLALFNAKFGPQHGKRVLRHRFKKLWKYYCDIMNLLQQNGFCWDEVQQMVVADDDIWDAYVKTHPFARSYRTKELPNYYDLVLIYGNVIDSENQNHLHLDKNLPNDISEENQMPTVSDRTRTYWTPPMDRYLIDLLLEQVNRGNKIGQTFVSHAWIDMVTTFNAQFRAHHDKDVLKNRYKHLRRLYNEIKILLEQRGFSWDENREIVTADDHVWDAYTKDHPVARSYRVKTVPSYHKLCFIFGEESSDRRYSRLAHDTDPSNEVPVLMTDERKNDQVPAGPSPMIDWTPQMDRAFIDLMLEHSQEGSMFSQAFSEQAWSHVIISFNERFKLQCGRSVLEDRYLWWMKQYGEIYNLLNHGGFMWNESQQLITAEDDLWEAYGKERPDALLYKDKFLGYYTDLCKIFGNVIDKEVNSRYTGEIDNENMEIKMDGNEQHLLLTSREFQISQQRKRPAEMISLDTELSKKVHRTENDVQKALSEMAGVVTRLVSMRQHHNYKAGEGAIDALQAIPDIDDELMLDACDLLEDERKAKTFMALDATLRKKWLLRKLRSQ 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1692029 1695691 + CmaCh09G003990.1 Cma09g00399 300404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00399 764 Pfam Myb/SANT-like DNA-binding domain 15 109 IPR024752 -
Cma09g00399 764 Pfam Myb/SANT-like DNA-binding domain 334 428 IPR024752 -
Cma09g00399 764 Pfam Myb/SANT-like DNA-binding domain 498 591 IPR024752 -
Cma09g00399 764 Pfam Myb/SANT-like DNA-binding domain 178 271 IPR024752 -
Cma09g00399 764 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 171 298 - -
Cma09g00399 764 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 496 633 - -
Cma09g00399 764 PANTHER EXPRESSED PROTEIN 1 163 - -
Cma09g00399 764 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 313 473 - -
Cma09g00399 764 PANTHER EXPRESSED PROTEIN 648 763 - -
Cma09g00399 764 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 163 - -
Cma09g00399 764 PANTHER EXPRESSED PROTEIN 313 473 - -
Cma09g00399 764 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 648 763 - -
Cma09g00399 764 PANTHER EXPRESSED PROTEIN 171 298 - -
Cma09g00399 764 PANTHER EXPRESSED PROTEIN 496 633 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00399 - - - cmax:111477186 1554.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00399 Cma-Chr9:1692029 Cma10g01066 Cma-Chr10:6674558 1.13E-63 dispersed
Cma09g00399 Cma-Chr9:1692029 Cma08g00445 Cma-Chr8:2506261 2.76E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g595 . . . . Bpe02g01266 . . . . . . . Car09g00350 . . . Cpe06g00286 . . . . . . . Cla05g01667 Cam05g1782 Cec05g1788 Cco05g1847 Clacu05g1770 Cmu05g1655 Cre05g1784 Cone4ag1737 Cone7ag1657 Cone17ag0974 Cone20ag0315 . . . . . Blo18g00251 Bda01g01017 . . . . . . . Cmo09g00402 Cma09g00399 . . . . . Bhi09g03029 . . . . . . . . . . . . . . . . Cme07g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006000 1 7 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00399 Cma_Chr09 FPKM 2.803231 3.177032 3.98359 3.663095 5.968307 6.679042 5.321951 2.834948 2.719399 3.127077