Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00401 ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGCGGAAGCAGATTTGTTACCCCTCGCTTCGATTCCTCCTCCGCTGATTCTTCGTCGCTTCGTCCACATGGCGGTGTTGCTTCAATCCTCAAGGCCGGTGATCTACGGTTCGAAGGTCGTGAGCGAATCCAGTACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCTCTGAGGATATCATGAAGATCAAACTAGAAGTTGAGACTGAGATACTTGGGGAGGATCAAACATGGGCTCGTGCTGAAAGCAATCAGCAATCACAATCTCAAGGCCGTTACTTTGAGCCGGACAGTCGAGATTGGCGTGGTCGAACAGGACAGTTACCCACCACAGAGGAAGGATCTTGGGAGGCAATTCGCGACAACAAGGACTTGACAGGACAATCTTTTCAAGACTCAAATAATAGGACTCAAGTTTCTGGTAACCAAGGGGTGGGTACTGCAGCTGCTCTTATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGATCGTGTTTTGAAGACAGTAAAAGGTATACTCAATAAATTGACTCCAGAAAAGTTTGACGTACTCAAAGGTCAATTGATTGACTCTGGAATTACATCTGCTGATATTTTGAAGGATGTTATTTCACTTATATTTGAGAAGGCCGTGTATGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCCGACCTTAATGAGAAGCTTCCTTCATTTACATCTGATGTGCCTGGGGAGAAAGATATCACTTTTAAACGAGTTCTCTTAAATATTTGCCAAGAAGCGTTTGAAGGTGCTGATAATCTGAGGGCAGAAATCAGGCAGATGACTAATCCTGATCAGGAAATGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGCCTGACCCCAAAATATGCCCTGCTGAGGAGAATGTTGAGGCTATTAGTCATTTTTTTAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGGCGGGTCAATGATCTATATTTCAGCCGATTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAAATGGGTACCTAGACGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCCGAGGCTGAAAAGAATTTAGGGCTTCGTCCGGGTTCGACTGCAATGATGAGAAATGGCCGTAATGCTGAGGCACTTGGGGGTCCTGGTGGTTTTCCTGTTGCTGGGCCTGGATTTGGGGGTATGATGCCTGGAATGCCGGGAACCAGGAAAATGCCTGGTATGCCTGGACTTGATTCAGACAATTGGGAGGTTCCTAGATCCCGATCAATGCCAAGGGGCGAAAGCGGAGGTCATACTCAGGCTTCTTCGCGTGTCCAGTCATCACTAATTGGCAAAACACCTTCCATTAATTCTAAATATTTACCTCAGGGAAGTGGTGGTGTAATAACGGGGAAAACAAGTGCTTTGCTACAGGGTAGCGCTGCTGCATCTCCTGCCCGACCAAGTTTCGTGCCTGGAACACAGCCTGTTGCCCACAACCCTAGACCAGTTGCTCCAGTTGCATCAGTCATACCTTCTCCTCAGAAGCCTACAGCTCCTTCTGTAGTATCCAATTCTGCTGATCTTCACAAGAAAACCGTTTCGCTGCTCGAGGAATACTTCAGTGTACGGATTCTTGCTGAAGCTCTACAGTGTGTAGAGGAGCTGAAAGCCCCAGCTTATCACCCAGAGGTTGTTAAAGAATCCCTTATCATAGCACTTGAAAAGATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACTTGCTTCACAAGAATGTCTTTACTGCAAAGGATATTGGTACGGGGTGCCTTCTATATGGGTCAATGATGGATGATATCGGCATTGATCTACCGAAGGCACCGAACAATTTTGGTGAGATTCTCGGGAAGCTAATATTGATCGGGGGCCTGGATTTTGCGGTCGTGAAGGAGATTCTTAAGAAGATGGAAGATAACTACTTCCAGAAATACATTTTTGGTGGTGTTATGAAGAGCCTCAAGTCTAGCCCTTCTGGAGAGGGAATTCTGGCAACTCAAAGTGCTGAGATCCAGGCATGTGAAACTTTACTTGCATGA 2313 46.0 MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILKAGDLRFEGRERIQYTRDQLLQLREVATVSEDIMKIKLEVETEILGEDQTWARAESNQQSQSQGRYFEPDSRDWRGRTGQLPTTEEGSWEAIRDNKDLTGQSFQDSNNRTQVSGNQGVGTAAALIKAEVPWSVRRGNISEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFEKAVYEPTFCPMYALLCSDLNEKLPSFTSDVPGEKDITFKRVLLNICQEAFEGADNLRAEIRQMTNPDQEMERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISHFFNTIGKQLDESPKSRRVNDLYFSRLKELTANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSTAMMRNGRNAEALGGPGGFPVAGPGFGGMMPGMPGTRKMPGMPGLDSDNWEVPRSRSMPRGESGGHTQASSRVQSSLIGKTPSINSKYLPQGSGGVITGKTSALLQGSAAASPARPSFVPGTQPVAHNPRPVAPVASVIPSPQKPTAPSVVSNSADLHKKTVSLLEEYFSVRILAEALQCVEELKAPAYHPEVVKESLIIALEKIPPCVDPVVKLLEHLLHKNVFTAKDIGTGCLLYGSMMDDIGIDLPKAPNNFGEILGKLILIGGLDFAVVKEILKKMEDNYFQKYIFGGVMKSLKSSPSGEGILATQSAEIQACETLLA 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1700705 1706150 + CmaCh09G004010.1 Cma09g00401 300406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00401 770 MobiDBLite consensus disorder prediction 101 115 - -
Cma09g00401 770 MobiDBLite consensus disorder prediction 25 39 - -
Cma09g00401 770 Gene3D - 184 419 - -
Cma09g00401 770 MobiDBLite consensus disorder prediction 499 523 - -
Cma09g00401 770 Gene3D - 600 761 - -
Cma09g00401 770 MobiDBLite consensus disorder prediction 1 43 - -
Cma09g00401 770 Pfam MA3 domain 606 716 IPR003891 -
Cma09g00401 770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 769 IPR045208 GO:0003743
Cma09g00401 770 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 769 - -
Cma09g00401 770 SMART ma3_7 605 717 IPR003891 -
Cma09g00401 770 SUPERFAMILY ARM repeat 602 756 IPR016024 -
Cma09g00401 770 SMART if4_15 193 418 IPR003890 GO:0003723|GO:0005515
Cma09g00401 770 ProSiteProfiles MI domain profile. 604 726 IPR003891 -
Cma09g00401 770 MobiDBLite consensus disorder prediction 509 523 - -
Cma09g00401 770 MobiDBLite consensus disorder prediction 101 134 - -
Cma09g00401 770 Pfam MIF4G domain 193 418 IPR003890 GO:0003723|GO:0005515
Cma09g00401 770 SUPERFAMILY ARM repeat 186 421 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01675 Cma09g00401 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01184 Cma-Chr6:7952970 Cma09g00401 Cma-Chr9:1700705 1.16E-61 dispersed
Cma09g00401 Cma-Chr9:1700705 Cma17g00068 Cma-Chr17:318062 6.00E-07 dispersed
Cma01g01675 Cma-Chr1:11433259 Cma09g00401 Cma-Chr9:1700705 0 wgd
Cma10g00459 Cma-Chr10:2086085 Cma09g00401 Cma-Chr9:1700705 0 wgd
Cma11g00450 Cma-Chr11:2201267 Cma09g00401 Cma-Chr9:1700705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00401 K03260 - csv:101211356 1250.73