Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00410 ATGCTACCAAAACAGGAGGGGTTAATTTTACGACATGTCGGTTTGCGAAAGAAGATATATTCCAGAGGACCAATAATTATGGTAGGGAAAAAAATGAAAGATAAGAAAGAAAATCTGGTTCTTCCAATTTGGAATTCCGCGTGGGGCCACGTCACTCCCATAGAGCAGGCAATCACGCCGCGCCGAATCATCCCGTCGCCGGAAATTACGGCCGATTCTTCTCCACCGCAGGTCCGGCCTACCGTCACCATCCACTTCTTTCTCATTAATTCATTTTTCGTAGTTCCCGCTCGTTTCTTTGGATTTATAACCTTCCAGCGATTTCTTCATTTCATCGTTGAGGCTGACAATATTCTCTTGATCATGTTGTTTCTTATCCTGTTTGTTTTGGTATTGGCTAGAGAAGCCATGGCGGATGTTAGCTCTAATCCAAATTCGGCTTCGGATACGTTGACGCTTGATGGAATAAGAGACTCTTTGATCAGACAGGAGAATTCTATTGTTTATAGTCTCATCGAGAGAGCTCGGTTCCCTCTCAATCGGCAGATATACCTTCAGAATAATGCTTCAATTCCTGGATTCTCTGGTTCTTTGGTCGAGTTCATTGTGAGAGAAACTGAGGCCATTCAAGCCAAGGCTGGTAGATACGAGAATCCTGAAGAAAATCCATTCTTCCCTGAGAGCTTGCCTCTTCCATTGGTGTTGAACCCTCACAAGTATCCAAAGGATTTGCATCCTTCAGGCGCTTCAATTAATATGAACAAAGCCATATGGGAATTCTACTTCAACAAATTCTTACCATTGTTGGTTGCCGATGGAGACGATGGAAATTATGCAGCCACTGCTGCTAGTGATCTTGCTTGTTTGCAGGAAAGAGATACTTTGATGAAGCTATTAACATTTGAAGCAGTGGAAGAGATGGTGAAGAAGAGAGTAGAGAGGAAGGCTATGGTGTTTGGGCAAGAAGTTACCCTCAACAACACAAACGAAGGAGGAAAGCATTCGATTGATCCATCGCTTGCATCTCGCCTTTACAGCGAATGGGTAATGCCACTCACGAAGGAAGTCGAAGTTGAGTACCTTCTATAG 1089 43.71 MLPKQEGLILRHVGLRKKIYSRGPIIMVGKKMKDKKENLVLPIWNSAWGHVTPIEQAITPRRIIPSPEITADSSPPQVRPTVTIHFFLINSFFVVPARFFGFITFQRFLHFIVEADNILLIMLFLILFVLVLAREAMADVSSNPNSASDTLTLDGIRDSLIRQENSIVYSLIERARFPLNRQIYLQNNASIPGFSGSLVEFIVRETEAIQAKAGRYENPEENPFFPESLPLPLVLNPHKYPKDLHPSGASINMNKAIWEFYFNKFLPLLVADGDDGNYAATAASDLACLQERDTLMKLLTFEAVEEMVKKRVERKAMVFGQEVTLNNTNEGGKHSIDPSLASRLYSEWVMPLTKEVEVEYLL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1738292 1742460 - CmaCh09G004100.1 Cma09g00410 300415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00410 362 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 292 362 IPR037039 GO:0004106|GO:0009073
Cma09g00410 362 PANTHER CHORISMATE MUTASE 140 290 IPR008238 GO:0004106|GO:0009073
Cma09g00410 362 PANTHER CHORISMATE MUTASE 290 362 IPR008238 GO:0004106|GO:0009073
Cma09g00410 362 SUPERFAMILY Chorismate mutase II 146 362 IPR036263 GO:0046417
Cma09g00410 362 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 146 291 IPR037039 GO:0004106|GO:0009073
Cma09g00410 362 ProSiteProfiles Chorismate mutase domain profile. 144 362 IPR008238 GO:0004106|GO:0009073
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00410 K01850 E5.4.99.5; chorismate mutase [EC:5.4.99.5] - csv:101213051 355.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01666 Cma09g00410 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00410 Cma-Chr9:1738292 Cma11g01158 Cma-Chr11:6701452 1.45E-67 dispersed
Cma01g01666 Cma-Chr1:11388621 Cma09g00410 Cma-Chr9:1738292 8.50E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g575 Blo01g01418 . Bda01g00662 . . Bpe02g00535 . . . . Cma01g01666 . Car09g00360 . . . Cpe06g00295 . . . . . . . Cla05g01680 Cam05g1795 Cec05g1804 Cco05g1862 Clacu05g1782 Cmu05g1667 Cre05g1797 Cone4ag1747 Cone7ag1666 . . Lsi04g01337 . . . . . . . . . . . Sed05g1745 Cmo01g01715 Cmo09g00415 Cma09g00410 . Car01g01280 . . Cpe02g00324 Bhi09g03009 Tan01g3563 Cmetu07g2151 . . . . . . . . . . . . . . Cme07g00121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008493 1 2 0 0 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00410 Cma_Chr09 FPKM 2.709826 2.719279 14.924191 13.758495 11.720509 14.205179 14.7144 30.271902 35.015667 32.969086