Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00411 ATGTGTAGTAGGTGCTCGAGGATTGGAGTGGACGGCGGCGCTTCGTCGTCTTCACCGGCGGAGATTGTAGGGCCAGCTAGCGAATGTCAGGAACAGATCGACGAACTCGAATCTGAGTTTGAGGCCGAGTTAGAACATTTGCAGCTCCCCTTGGATGTTGAAAGTTCATCAGGACGCATAGAGAAGCTAAGAATTAAGAGATATGGTGGATATGCCGAAAGCAGGGGTGTAGGTTACTTCATTTTGAAGATGCGCACCGAAGAGCATGAAAGGGGGGCTCGCGTCAGAAACCCTAATTGGTACATACGTGTCCAATTGAAACGTGATGCTATAAATTGGCCTCGTCCTCTTGACTCGTACGCTCCTCCTTCCTCTCGTTTTCCTTCTGCTTCCACCGAATCGCACTGTTTGACACAGAAGAAGAAGCTCGGAAGCTGCAGAAGAACTAAATCTTCAGCCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGTTACATCGTCATCAAGAACCGTCCATGCAAGGTAGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGCCATGCGAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGCAACACCAAGGATGACTTAAGGCTCCCAACTGATGACAACTTGCTCTCTCAGATTAAGGATGGTTTTGCCGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG 942 48.73 MCSRCSRIGVDGGASSSSPAEIVGPASECQEQIDELESEFEAELEHLQLPLDVESSSGRIEKLRIKRYGGYAESRGVGYFILKMRTEEHERGARVRNPNWYIRVQLKRDAINWPRPLDSYAPPSSRFPSASTESHCLTQKKKLGSCRRTKSSAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1742982 1748733 - CmaCh09G004110.1 Cma09g00411 300416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00411 313 PANTHER BNAA07G09420D PROTEIN 154 309 - -
Cma09g00411 313 Gene3D - 239 312 IPR012340 -
Cma09g00411 313 SUPERFAMILY Nucleic acid-binding proteins 239 309 IPR012340 -
Cma09g00411 313 TIGRFAM eIF_5A: translation elongation factor IF5A 170 306 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma09g00411 313 SMART eIF_5a_2 238 307 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma09g00411 313 MobiDBLite consensus disorder prediction 1 23 - -
Cma09g00411 313 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 203 210 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma09g00411 313 MobiDBLite consensus disorder prediction 147 173 - -
Cma09g00411 313 CDD S1_eIF5A 239 309 - -
Cma09g00411 313 Coils Coil 26 46 - -
Cma09g00411 313 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 238 307 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma09g00411 313 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 154 309 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma09g00411 313 SUPERFAMILY Translation proteins SH3-like domain 168 246 IPR008991 -
Cma09g00411 313 Gene3D - 154 238 IPR014722 -
Cma09g00411 313 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01664 Cma-Chr1:11385332 Cma09g00411 Cma-Chr9:1742982 1.22E-117 dispersed
Cma04g01685 Cma-Chr4:8481658 Cma09g00411 Cma-Chr9:1742982 1.55E-108 dispersed
Cma09g00411 Cma-Chr9:1742982 Cma18g01122 Cma-Chr18:9117309 6.35E-110 dispersed
Cma10g00469 Cma-Chr10:2120321 Cma09g00411 Cma-Chr9:1742982 2.36E-31 transposed
Cma01g01663 Cma-Chr1:11379497 Cma09g00411 Cma-Chr9:1742982 5.62E-10 wgd
Cma10g00468 Cma-Chr10:2119507 Cma09g00411 Cma-Chr9:1742982 6.79E-27 wgd
Cma11g00460 Cma-Chr11:2241935 Cma09g00411 Cma-Chr9:1742982 7.47E-100 wgd
Cma05g00350 Cma-Chr5:1543134 Cma09g00411 Cma-Chr9:1742982 5.28E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00411 K03263 K02180 fve:101296375 327.02