Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00411 | ATGTGTAGTAGGTGCTCGAGGATTGGAGTGGACGGCGGCGCTTCGTCGTCTTCACCGGCGGAGATTGTAGGGCCAGCTAGCGAATGTCAGGAACAGATCGACGAACTCGAATCTGAGTTTGAGGCCGAGTTAGAACATTTGCAGCTCCCCTTGGATGTTGAAAGTTCATCAGGACGCATAGAGAAGCTAAGAATTAAGAGATATGGTGGATATGCCGAAAGCAGGGGTGTAGGTTACTTCATTTTGAAGATGCGCACCGAAGAGCATGAAAGGGGGGCTCGCGTCAGAAACCCTAATTGGTACATACGTGTCCAATTGAAACGTGATGCTATAAATTGGCCTCGTCCTCTTGACTCGTACGCTCCTCCTTCCTCTCGTTTTCCTTCTGCTTCCACCGAATCGCACTGTTTGACACAGAAGAAGAAGCTCGGAAGCTGCAGAAGAACTAAATCTTCAGCCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGTTACATCGTCATCAAGAACCGTCCATGCAAGGTAGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGCCATGCGAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGCAACACCAAGGATGACTTAAGGCTCCCAACTGATGACAACTTGCTCTCTCAGATTAAGGATGGTTTTGCCGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG | 942 | 48.73 | MCSRCSRIGVDGGASSSSPAEIVGPASECQEQIDELESEFEAELEHLQLPLDVESSSGRIEKLRIKRYGGYAESRGVGYFILKMRTEEHERGARVRNPNWYIRVQLKRDAINWPRPLDSYAPPSSRFPSASTESHCLTQKKKLGSCRRTKSSAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1742982 | 1748733 | - | CmaCh09G004110.1 | Cma09g00411 | 300416 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00411 | 313 | PANTHER | BNAA07G09420D PROTEIN | 154 | 309 | - | - | |
Cma09g00411 | 313 | Gene3D | - | 239 | 312 | IPR012340 | - | |
Cma09g00411 | 313 | SUPERFAMILY | Nucleic acid-binding proteins | 239 | 309 | IPR012340 | - | |
Cma09g00411 | 313 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 170 | 306 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cma09g00411 | 313 | SMART | eIF_5a_2 | 238 | 307 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cma09g00411 | 313 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma09g00411 | 313 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 203 | 210 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cma09g00411 | 313 | MobiDBLite | consensus disorder prediction | 147 | 173 | - | - | |
Cma09g00411 | 313 | CDD | S1_eIF5A | 239 | 309 | - | - | |
Cma09g00411 | 313 | Coils | Coil | 26 | 46 | - | - | |
Cma09g00411 | 313 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 238 | 307 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cma09g00411 | 313 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 154 | 309 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cma09g00411 | 313 | SUPERFAMILY | Translation proteins SH3-like domain | 168 | 246 | IPR008991 | - | |
Cma09g00411 | 313 | Gene3D | - | 154 | 238 | IPR014722 | - | |
Cma09g00411 | 313 | MobiDBLite | consensus disorder prediction | 151 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01664 | Cma-Chr1:11385332 | Cma09g00411 | Cma-Chr9:1742982 | 1.22E-117 | dispersed | |
Cma04g01685 | Cma-Chr4:8481658 | Cma09g00411 | Cma-Chr9:1742982 | 1.55E-108 | dispersed | |
Cma09g00411 | Cma-Chr9:1742982 | Cma18g01122 | Cma-Chr18:9117309 | 6.35E-110 | dispersed | |
Cma10g00469 | Cma-Chr10:2120321 | Cma09g00411 | Cma-Chr9:1742982 | 2.36E-31 | transposed | |
Cma01g01663 | Cma-Chr1:11379497 | Cma09g00411 | Cma-Chr9:1742982 | 5.62E-10 | wgd | |
Cma10g00468 | Cma-Chr10:2119507 | Cma09g00411 | Cma-Chr9:1742982 | 6.79E-27 | wgd | |
Cma11g00460 | Cma-Chr11:2241935 | Cma09g00411 | Cma-Chr9:1742982 | 7.47E-100 | wgd | |
Cma05g00350 | Cma-Chr5:1543134 | Cma09g00411 | Cma-Chr9:1742982 | 5.28E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00411 | K03263 | K02180 | fve:101296375 | 327.02 |