Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00412 ATGGCCCTATTTCGCAAGTTCTTTTATCGGAAGCCACCGGACGGGCTGTTAGAGATATCCGAAAGGGTTTATGTTTTCGATAGCTGCTTTACGACGGAGGTATTGGAAGAGGATGAATACAAGGTCTATATTGGAGGCATTGTAGGAAAGCTTCGTGAGAGTCTCACTGACGCTTCGTTCATGGTGTTTAATTTTCGAGAAGGGGAGGGTCATAGCCTCATTACTAATATATTATCTGTATATGATATGACCGTCATGGATTATCCGAGACAATATGAAGGCTGCCCTCTACTCACCATGGAGATGATCCACCACTTCTTAAGATCCAGCGAAAGCTGGCTCTCACTTGGGCAGCAAAATGTACTTTTGATGCATTGTGAAAGAGGGGGGTGGCCTGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAATATGCAGGGGAGCAAAAAACTTTGGACATGATTTACAAGCAAGCGCCTCGGGAGCTTTTGCAGTTGATGTCACCACTTAACCCAATGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGCTCACAATGGCCTCCGCTCGACAGGGCGCTCACTCTAGACTGCATTATTATTAGATTGATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTCAGGATATATGGACAGGATCCCTTTTTGGTGGCGGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTTTAAGCAGGTAGATTGTGAACTTCTTAAAATTGATATCCATTGCCATATACAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGTAAGGGAGGAGATGATGTTTCGGGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGACGACATTGATATCGTATGGCATGCAAACGATCAATTTCCAAAGGATTTCAGAGCAGAGATTCTTTTCTCAGAGATGGATGCTTCCGCACCACTTGTTTCAATTGAATTGCCAAATATTGAGGAGAAAGATGGCCTTCCGATTGAAGCATTTGCAAGAGTTCAAGAGATCTTTAGCACTGAGGACTGGCTAAGCCCAAAGGCTAATGCAGCTCTTAATATGCTCCAGAAAATAACAGCTACGAATTTTCTTACAGAGAAAATGGCTAGTTCCAGCCCTTTAGAGAGAACGGAGATGCTCGACTTATCTCTCGATAAACTAGCTATGGAATCAGAGACATCTGAAGACGATGTTATAAGTCCCCGATCGAAGATGGATACAGATCAATATCGGCCTTCTTTTGAACTATCCCACGCTGCAAGTTCAGCGAGATCAAAGATTGAACCCCCAGAATTGCAGGTTGCTCTCCAACTACCAGTTCAGTCTAAAATCATCACCCAACGAGTACCTCAACCTCCATTGTCGACGCCAGACTCCTTCCCTAGTTCTGTGCAAGGTTCACCTCGCGCAATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACATGATCATTCCACATTTAGTGGTAAAGAAGTCCTACAGCCAACAATGTCCTCACCATCATCTGGTCTGTTGAGTATGCGTGCTCTAGATTCCCTGAAAGATATTCAACCTAGTAAGCTTCCTATTTTGCCAACTTCAACCATTACTGATCCGTTGACACTTCACCAACGTTCCTTGAAACCTCTAAAATTTTCACATCCTCAACCTCCTCAAGCCGCTCCACGGGGGAGAAGTCAATTGTCACCTTCTTCATCTCAACCAACACCCACCTCTTTTCGTCGGGAGTCCCCACCCTCTTTCAATGAGAGTGAACCTTCAAGATCCTCTTCTAAGGAACCATTTTCTGTTCCCATTCATCCCTCACCTTCGGCTTTAGTAACATCTCTATGTACTAGTAGGACGAATGGTTCATTTTCCCCATCCGCACCACAACCCCCTTCTACGAAAGTACTGTTATCTTCTACGAAGAACTTGACGAGTGTCTCTACCCTTCCCTTCCCTCCTCCTCCTCCTCCATGCTGTACCCCTAACTTGGGTGCTAGTGTTGTCTTGCCAACATCAGTGCCCCAACCCCCACCTCCACCTCCTTCATTGAAGGACTCTATAATCACAGTCAGGCATGATCCCCGATCTCCACCTCCCGCACCACCCTTGCCTCCATCTTTTTTGAGTTCAACACCTACTTGTGATTCTACTATCACACCTCCTCCTAGTCTTGCACCACAAGATTCTGCCACAGTAGTTAGGAACTCAACGGTTGTACCTGGCGCTCCACCTCCCCCACCTCTCCCGTCTCATTCTTCTTCAAGTCCTAGTACTATATCTTCAGTGCCACCCCCGCCACCCCCTCCTCGTCTTGCACCAAATGTCTCTGCCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGATCCACCTTATGTTCAGGTGTTGCAACGTCAGCTCCACCTGCTCCTCCTCCTCCAGGTTTTTCAATGAAGGAGTCTGCAACACATGCTCCACCTGCACCCCCTCCCCCAGGTCTCAACGGTAATAAACTTTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCACTAATAACAGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGGTCTATTCAGTGCAAAGGCACGATGCATTGGACGTTTGAACGCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCTTATCACTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCCTGTGGGCAGAGACACAAAAAAGTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAAAATCTGGAGGTGTGGGTGGAAATTCAAATCGCCTAGCCTCAGGGCCGAAATCAGAGAAAGTTCAATTGATTGAACTTCGACGGGCATATAATTGCGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCCGATATGATGTGTTCAGTACTTGCATTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACAGTGGTGATAAGGAGAACTTGGGAAAATGTGAACAGTTCTTTTTAGAATTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCATTTGCAGGCCTCTGAACTTAGAAATAATCTGAACACTATCAATTCGACATCTGATGAGATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCGTTGGGTAACGCTTTGAACCACGGAACGGCTAGAGGTTCGGCGATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCGAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTTTAGATTTTCCAAAGGACCTTGTGAGTTTGGAAGCTTCTACAAAGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTGGAGAAAGTTGTTCAGGAATTAGCTAATTCCGAGAACGACGGGCACGTTTCAGAAAATTTTTGTCAGACTTTAAAAAACTTCCTTTCTCATGCTGAGGCCGAAGTGAGGTCCCTTGCCTTTCTTTATTCTAACGTGGGTAGAAATGCCGATGCACTCGCTCTTTATTTCGGCGAAGATCCAGCACGTTGCCCTTTCGAGCAAGTTGTTTCTACACTGTTCAATTTCGTGAGGATGTTCGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTTGATTATGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGATAAGTTAAAGGTCAGTACCCCGAAAAAGGAGTCGCGATTCTTCATGCAGACACCAACCTAG 3996 44.67 MALFRKFFYRKPPDGLLEISERVYVFDSCFTTEVLEEDEYKVYIGGIVGKLRESLTDASFMVFNFREGEGHSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPMPSQLRYLQYVSRRNVGSQWPPLDRALTLDCIIIRLIPNMDGEGGCRPIFRIYGQDPFLVADRTSKVLFSTPKKSKLVRQFKQVDCELLKIDIHCHIQGDVVLECISLDNDLVREEMMFRVMFNTAFIRSNILMLNRDDIDIVWHANDQFPKDFRAEILFSEMDASAPLVSIELPNIEEKDGLPIEAFARVQEIFSTEDWLSPKANAALNMLQKITATNFLTEKMASSSPLERTEMLDLSLDKLAMESETSEDDVISPRSKMDTDQYRPSFELSHAASSARSKIEPPELQVALQLPVQSKIITQRVPQPPLSTPDSFPSSVQGSPRAILRYHSAPSALGITALLHDHSTFSGKEVLQPTMSSPSSGLLSMRALDSLKDIQPSKLPILPTSTITDPLTLHQRSLKPLKFSHPQPPQAAPRGRSQLSPSSSQPTPTSFRRESPPSFNESEPSRSSSKEPFSVPIHPSPSALVTSLCTSRTNGSFSPSAPQPPSTKVLLSSTKNLTSVSTLPFPPPPPPCCTPNLGASVVLPTSVPQPPPPPPSLKDSIITVRHDPRSPPPAPPLPPSFLSSTPTCDSTITPPPSLAPQDSATVVRNSTVVPGAPPPPPLPSHSSSSPSTISSVPPPPPPPRLAPNVSAPPPPPPPPFANSGSTLCSGVATSAPPAPPPPGFSMKESATHAPPAPPPPGLNGNKLSNVNGTSSQSHVGTNNSNIPSIPGPPSSGLFSAKARCIGRLNAKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKSDEASKAPEFDMSELESLFSAAAPNSKSGGVGGNSNRLASGPKSEKVQLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDESALDVDQVENLIKFCPTKEEMELLKGYSGDKENLGKCEQFFLELMKVPRVESKLRVFSFKIQFHLQASELRNNLNTINSTSDEIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGHVSENFCQTLKNFLSHAEAEVRSLAFLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLDYEKKKAQKEAAEKDKLKVSTPKKESRFFMQTPT 1331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1750408 1759151 + CmaCh09G004120.1 Cma09g00412 300417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00412 1331 MobiDBLite consensus disorder prediction 793 822 - -
Cma09g00412 1331 Gene3D Formin, FH2 domain 930 1324 IPR042201 -
Cma09g00412 1331 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Cma09g00412 1331 MobiDBLite consensus disorder prediction 864 892 - -
Cma09g00412 1331 MobiDBLite consensus disorder prediction 728 742 - -
Cma09g00412 1331 MobiDBLite consensus disorder prediction 591 639 - -
Cma09g00412 1331 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cma09g00412 1331 SMART PTEN_C2_2 197 337 IPR014020 -
Cma09g00412 1331 Gene3D - 196 341 - -
Cma09g00412 1331 SUPERFAMILY Formin homology 2 domain (FH2 domain) 837 1306 - -
Cma09g00412 1331 MobiDBLite consensus disorder prediction 1306 1331 - -
Cma09g00412 1331 MobiDBLite consensus disorder prediction 700 898 - -
Cma09g00412 1331 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cma09g00412 1331 SMART it6_source 568 1326 IPR015425 -
Cma09g00412 1331 MobiDBLite consensus disorder prediction 581 639 - -
Cma09g00412 1331 Pfam Formin Homology 2 Domain 913 1286 IPR015425 -
Cma09g00412 1331 PANTHER FORMIN-J 1 1322 - -
Cma09g00412 1331 MobiDBLite consensus disorder prediction 1306 1320 - -
Cma09g00412 1331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 187 IPR029021 -
Cma09g00412 1331 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Cma09g00412 1331 ProSiteProfiles Formin homology-2 (FH2) domain profile. 911 1312 IPR015425 -
Cma09g00412 1331 MobiDBLite consensus disorder prediction 743 770 - -
Cma09g00412 1331 Coils Coil 1287 1307 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01662 Cma09g00412 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00804 Cma-Chr1:4326581 Cma09g00412 Cma-Chr9:1750408 1.29E-150 dispersed
Cma09g00412 Cma-Chr9:1750408 Cma10g00209 Cma-Chr10:925548 9.60E-178 dispersed
Cma19g00587 Cma-Chr19:6516097 Cma09g00412 Cma-Chr9:1750408 4.78E-07 dispersed
Cma01g01662 Cma-Chr1:11366769 Cma09g00412 Cma-Chr9:1750408 0 wgd
Cma10g00473 Cma-Chr10:2140987 Cma09g00412 Cma-Chr9:1750408 0 wgd
Cma11g00467 Cma-Chr11:2260206 Cma09g00412 Cma-Chr9:1750408 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00412 - - csv:101214019 1870.9