Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00420 ATGACGGTTGAGCCTAGAATCGATGATCCAAATGACCAATTTCCGATTGGAATGCGTGTTCTCGCCGTTGACGATGATCCTACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTGACTACAACTAATCAGGCTATCATGGCACTTAAGTTGCTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGTTAGAGCTCGTTGGACTGGAGATGGACCTGCCTGTTATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCGTGCGATTACTTGTTGAAACCTGTTCGCATCGAGGAGCTAAGGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCGAAGGACCGAATGAATTCCGGCAATCAGGACAAGGTTGATTCTGAGAATGGTGAAGAAGCAGCAGACCCAAATGGGAAATTTAACAAAAAAAGGAAGGACCAGAACTATAATGATGATGATGACCAGGACTATAATGAGCAAGAGAATGATGACGCGTCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAGTTTGTCAATGCCGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGATTTGATGAACGTCGAAAAGCTCACAAGAGAAAACGTAGCTAGTCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGGAGATCCTTCTTATTTGAGAATCGGTTCTCTTAGCGGAATTGGGAATTTTCATTCTTTGACTGGACCTCCGCAGTTTCCGAACACTGCTTATAGATCCATCCCAACAACTGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGTATGCACGGCCTTTCGTCCCCAGGAACAGTTAAACTGGGTAATATGAACAATTCAAACAACGATCAATCCACATTTCAGCCAATCATGCTTTCTGGAAACCGCAGTGGGAATATTTTCCAGGGAATTCCCGAGCCATCAGAACTTGATAAACTACAACATGTTAAGCACGGGACCCATGTGGACAATCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTACCAAATGCAAACATGTCTTCTGGAACTTTGAGTAATCCTCTTTTAGGATTAGCTAATGATCCCATGATTTCAGAAGTTCAGCATCATGAAGTGAATGTTGGCAGAAAATTTGGACCTCAATCTTCAATTTCGGTACTATCTTCAACTTCCGAAAGCTCACGTCCTTCGCTCGAGAATGTTAGATGCACTGGTGAGAATTGGTCGAAAGCTGTTCATTCATCTCGGGTCCACTTGAATACAATTCCATCTAGCAACCTTTCGAATATTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCGTCTATTACTTCAATATCTACTCCGTCCCATGATTCGAGAACAGATTCTCAACGACAAGGAGCCACAACTAGCAACAGATATAATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAACAGGATGCCTATTGCCACACAACTATGGCCTGTAGTTCATCAAATTCTTTTATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAGCATTTGGAAAATCAGAACACCTTCTCTGGTAGCAAGGATTTCAATGTGACTAATCAAGCAATTGTTCTTGATCATGCAATGATGGAACATGATAGATTCAAGAAATCCACAATGGAGACATCGCTCATGTTGAAACAAGGTTACCTGTACGATCATCAGCAAAAGATGCAACCCAGATTCTCTTCAAGTAACTGCGGCTCCTTGGAAGACATAGCTTGTGCCATGATGAAAGAGGAACAAGATGATGGAAAATTATTGGAAGGGGACTTTGGATGTGATAATTATCCCATTGGAACATGCATGTGA 2070 42.37 MTVEPRIDDPNDQFPIGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELRNIWQHVIRRKKFDPKDRMNSGNQDKVDSENGEEAADPNGKFNKKRKDQNYNDDDDQDYNEQENDDASTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSGDPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNTPACMGMHGLSSPGTVKLGNMNNSNNDQSTFQPIMLSGNRSGNIFQGIPEPSELDKLQHVKHGTHVDNLSSAFDERTVFPASIGLPNANMSSGTLSNPLLGLANDPMISEVQHHEVNVGRKFGPQSSISVLSSTSESSRPSLENVRCTGENWSKAVHSSRVHLNTIPSSNLSNIATSYHSQLRDNTTSALHIGNCLSDISSITSISTPSHDSRTDSQRQGATTSNRYNQMISKVPVQDWNDHKQDAYCHTTMACSSSNSFIPVNGAAETLPKHLENQNTFSGSKDFNVTNQAIVLDHAMMEHDRFKKSTMETSLMLKQGYLYDHQQKMQPRFSSSNCGSLEDIACAMMKEEQDDGKLLEGDFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1816748 1821098 - CmaCh09G004200.1 Cma09g00420 300425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00420 689 Gene3D - 194 257 - -
Cma09g00420 689 MobiDBLite consensus disorder prediction 521 541 - -
Cma09g00420 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cma09g00420 689 SUPERFAMILY CheY-like 17 142 IPR011006 -
Cma09g00420 689 MobiDBLite consensus disorder prediction 141 197 - -
Cma09g00420 689 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Cma09g00420 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 664 - -
Cma09g00420 689 SMART REC_2 18 130 IPR001789 GO:0000160
Cma09g00420 689 CDD REC_typeB_ARR-like 20 134 - -
Cma09g00420 689 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Cma09g00420 689 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Cma09g00420 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cma09g00420 689 Gene3D - 17 153 - -
Cma09g00420 689 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cma09g00420 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 IPR045279 GO:0009736
Cma09g00420 689 MobiDBLite consensus disorder prediction 141 179 - -
Cma09g00420 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01254 Cma-Chr8:7655266 Cma09g00420 Cma-Chr9:1816748 5.50E-102 dispersed
Cma09g00420 Cma-Chr9:1816748 Cma10g00483 Cma-Chr10:2210896 7.16E-126 dispersed
Cma01g01650 Cma-Chr1:11291445 Cma09g00420 Cma-Chr9:1816748 0 wgd
Cma11g00478 Cma-Chr11:2318504 Cma09g00420 Cma-Chr9:1816748 8.22E-144 wgd
Cma12g01172 Cma-Chr12:9241331 Cma09g00420 Cma-Chr9:1816748 2.25E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35608 PF00072 Response_reg 6.70E-23 CL0304 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00420 - K14491 csv:101215220 1201.42