Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00422 ATGGCGGGCGTTTTCCGATCAGCTCACCGGCAGATTCGATCATCCTACATACTTCGTAACGAGATCGAGTACCAGTCCGATTACGCTCCTCTCCATCTGCCTGCAATGAGGTTCAATTCATTTGCGGTTGAAGACCGACCGGGCATGCAGTGGATTACATTGAAAGGAAAATTTGGTGACACTGAAGATATTAAAATTGAAGCGACGATGTTTGATGGCTGCAAATCTGTTCCTAAACTTGGAGACGATAGCGATGGTGAAGAAGACCTCCGTCTTCACAGTAGCGTGCTTGTTGATATTTCGAAGAGGGATGGTTCGGACTATTTGGAGTTCGTGTGCTCGGCATGGCCTGATTCGTTGGAGATTCAGAAACTATATGTTCTTAAACGAGATAGAATGCTTTCAAGACCCTGTATGGGGCCTGATTTTAGGAAATTGAGCAGCGAAATTCAGATCGAATTTCGGGAGTTCTTAGCAGAAAGGAGGATAGATAAGGAGCTTGCTGTATTTTTGCATGAATATATGATGAACAAGGACAGATGTGAACTTATTCGATGGTTGGCAACTGTCAAAACTTTCGTGGAAAGATAA 591 43.82 MAGVFRSAHRQIRSSYILRNEIEYQSDYAPLHLPAMRFNSFAVEDRPGMQWITLKGKFGDTEDIKIEATMFDGCKSVPKLGDDSDGEEDLRLHSSVLVDISKRDGSDYLEFVCSAWPDSLEIQKLYVLKRDRMLSRPCMGPDFRKLSSEIQIEFREFLAERRIDKELAVFLHEYMMNKDRCELIRWLATVKTFVER 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1833532 1836986 - CmaCh09G004220.1 Cma09g00422 300427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00422 196 Pfam Mitochondrial glycoprotein 36 194 IPR003428 GO:0005759
Cma09g00422 196 PANTHER BNAA03G51840D PROTEIN 17 195 - -
Cma09g00422 196 SUPERFAMILY Mitochondrial glycoprotein MAM33-like 17 195 IPR036561 -
Cma09g00422 196 PANTHER COMPLEMENT COMPONENT 1 17 195 IPR003428 GO:0005759
Cma09g00422 196 Gene3D Mitochondrial glycoprotein 15 194 IPR036561 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00422 K15414 C1QBP; complement component 1 Q subcomponent-binding protein, mitochondrial - csv:101215463 301.982
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01648 Cma09g00422 CCT
Cma01g01648 Cma09g00422 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00422 Cma-Chr9:1833532 Cma14g00116 Cma-Chr14:503997 3.69E-18 dispersed
Cma01g01648 Cma-Chr1:11282949 Cma09g00422 Cma-Chr9:1833532 5.28E-112 wgd
Cma08g00594 Cma-Chr8:3375349 Cma09g00422 Cma-Chr9:1833532 2.80E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g526 . Blo12g01059 . . . . . . . . Cma01g01648 . . . . . Cpe06g00307 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed13g1983 Cmo01g01700 . Cma09g00422 . . . . . Bhi09g02980 Tan01g3587 Cmetu07g1548 . Hepe01g1981 Mch11g0517 . . . . . . . . . . . Cme07g00106
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007701 1 2 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00422 Cma_Chr09 FPKM 1.90835 1.115958 1.029484 1.109458 0.737071 0.782292 0.476316 1.027341 1.352184 1.116605