Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00430 ATGGCGTATCACAATCACCTCTCACAGGACCTTCCCCTCCACTTTTCTGACCACCAACAACACCACCAAAATCAGCCTCTCTCTGATACCTCTCTGCGTACAATTCTGCCGGACCAACTTGCCGGCGGTCACTCCTCGCCGGACCCCAAGTCCCACCATCATCACCACCATCATCCGCTGCAGACAGCGCCGAATTGGCTCAACAACGCACTGCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCGTCACCACAGCCGCCGCCGCAGCCGCCAATACCAATTTCCTCAACCTTCACACCACTGCATCCGATTCCACCGTCTCTCACTCCTCAAACCAATGGCTCTCCCGTCCGATCCTCCACCGAAACCATAGCGATGTCATCGACGATGTCACCGCCTCCGCCGGTGATGCCATGATCGGTGCCGCTACCGCCGCACTCTCTCACGATTCCGGTGAGATGAAGAACGACGCTAACAGCGGCGATGGAATGAACAAGAGCGAGGGTATGGTGATGGAACCAAGCGCCGGTGGAGAGGGGGTTTTGAATTGGCATAATGCTCGTTACAAAGCCGAGATTCTCACTCATCCTCTTTACGAGCAGCTTCTCTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCCGTCGATCAATTACCGAGGATCGACGCCCAGCTCGCTCAATCTCAGAATGTCGTCGCTAAATACTCCGCTTTAACCCACACCGCTCCACCGCCCATGGTTGGTGATGACAAAGAGCTTGATCAATTCATGACGCATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTCCAACAGCATGTTCGTGTCCATGCAATGGAAGCTGTAATGGCTTGCTGGGACATTGAGCAGTCCCTTCAAAGCTTAACAGGAGTTTCACCCGGTGAAGGTACAGGAGCCACGATGTCGGACGACGAAGACGACCAGGTCGACAGTGATGCAAATTTATTTGATGGGAGTCTAGAGGGTCCAGACACTATGGGATTTGGCCCTCTTATTCCCACAGAAAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAGCTGAAGCATGAGCTAAAATCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTTTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACGGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAGCTGAAACAGATAAACAATTGGTTCATCAACCAAAGGAAGCGAAACTGGCACAACAATCCTTCAAGTTCTACCAACTTGAAAAGCAAACGCAAAAGGTATAATATAATATAA 1383 50.69 MAYHNHLSQDLPLHFSDHQQHHQNQPLSDTSLRTILPDQLAGGHSSPDPKSHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTVTTAAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVTASAGDAMIGAATAALSHDSGEMKNDANSGDGMNKSEGMVMEPSAGGEGVLNWHNARYKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALTHTAPPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHNNPSSSTNLKSKRKRYNII 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1876271 1880207 + CmaCh09G004300.1 Cma09g00430 300435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00430 460 SMART KNOX2_2 247 302 IPR005541 GO:0003677|GO:0005634
Cma09g00430 460 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677
Cma09g00430 460 SUPERFAMILY Homeodomain-like 381 446 IPR009057 -
Cma09g00430 460 Pfam KNOX1 domain 192 233 IPR005540 GO:0003677|GO:0005634
Cma09g00430 460 Pfam ELK domain 359 380 IPR005539 GO:0003677
Cma09g00430 460 SMART ELK_2 359 380 IPR005539 GO:0003677
Cma09g00430 460 CDD homeodomain 382 443 IPR001356 GO:0003677
Cma09g00430 460 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 51 457 - -
Cma09g00430 460 SMART HOX_1 381 446 IPR001356 GO:0003677
Cma09g00430 460 Pfam KNOX2 domain 251 301 IPR005541 GO:0003677|GO:0005634
Cma09g00430 460 MobiDBLite consensus disorder prediction 438 460 - -
Cma09g00430 460 MobiDBLite consensus disorder prediction 37 62 - -
Cma09g00430 460 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Cma09g00430 460 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Cma09g00430 460 MobiDBLite consensus disorder prediction 301 320 - -
Cma09g00430 460 SMART KNOX1_2 190 234 IPR005540 GO:0003677|GO:0005634
Cma09g00430 460 Gene3D - 380 442 - -
Cma09g00430 460 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 51 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01492 Cma-Chr2:8524124 Cma09g00430 Cma-Chr9:1876271 1.99E-133 dispersed
Cma05g00364 Cma-Chr5:1621023 Cma09g00430 Cma-Chr9:1876271 0 dispersed
Cma09g00430 Cma-Chr9:1876271 Cma15g01189 Cma-Chr15:7530904 8.17E-101 dispersed
Cma01g01485 Cma-Chr1:10450414 Cma09g00430 Cma-Chr9:1876271 0 wgd
Cma12g00351 Cma-Chr12:1779420 Cma09g00430 Cma-Chr9:1876271 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35610 PF03791 KNOX2 1.90E-21 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00430 - - bhj:120085761 828.165