Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00449 ATGATGCAGAATCGAAGTCCGCCCAAGCATCGACACGATGGCACCTCGCCGTTGCCTCTTGGAATGGACTGGAGCCCTCCTCCTCGAAAATGGAATGGGAAGAACACAGTTTGGCCTCATGACCATCACACTGGATGGAGTTACTGTGTCATAATACCTTCATGGGTTGCACTTCCTAAAACACGAGTTGCAGATCCCGTAGTGGGACAGTTCTACAGGGTTCAGGTTGGTGTACAGTCACCTGAGGGGATCACAGCGATGCGGGGAGTATTAAGGCGATTTAATGATTTCTTGAATTTATTTTCTGATGTTAAAAAGGCTTTTCGAAAGAAAACTATTCCACCAGCTCCATCCAAAGGAATCTTACGGGTGAAAACCAGGACGCTCTTAGAAGAGGTGCACAATCTGCAGAACGTTGCATGCATGAGTTTAATTTTGTTGCAGAGAAGGCGCTCTTTGGAGGAGTGGTTGACAAAGCTGTTGTCTGACATCGACATATCAAGAAGTGCTGCAGTAGCGTCCTTCCTTGAGCTAGAAGCTGCTGCTAGGTCTTTTTTCCAAAATGATAATCAGGGGCCTTCAGATGAAAACCCTGATTATAACAGCAAAATTTGTACACATCAATCCCCTCCTAATTCAAGCTCATCTACTGTTGCCGGTGGTTTGTCGCTTGCATCAGATTATGGCAGTGATACTGCTTATGAGGCGTCTGAACTTGGTACAGCAAGTCTGGGAAGAGATGATAATTCTGAAATTGCCATGGATGATTTAGCTCTGGACGACGATCTTTCCAGTCCAATTGAAAAACTTGTGAAGTATGGATTGTCCAATATTGATGAGGGACTCTTTATGGGTCAGGCCATTATAGAGCAGTTGGAAGGCCTTCCAAAACACAAATCTCATCCTAGATATAATAGCAATTTAAAGGATGGGCACAATGGTAGTACTTCCAAGGCATCGTACTTGAATAAAAATGGACTGGTGCCGTTTGCAGATCCCGAGCATGGCAAGGTAATTGGTCATGCTCGCAAGCTGTCTGATGAGAGTGTGGCAAGTGATGCAAGTTCTCTGAGAGGTGGAGAAATTTCAAGCTTTTCACCATTAGGCAATGGCTCACTTCACCATTCAGGTGCTGAGGTTTCAAATGCAGTCGAATTTCTTAGCAACCCTGAATTGCATTTTTCACATGATGCACTGCTCTTCCCAAAGGATCATCGCCATAAATTGAATAGGGTTCTTTCAACAATGCTCCAAAGGCTAGTGACTGCAAAAACAGACATGGAGGACCTTATATCAAGATTGAACCAGGAAATAGCCGTGAAAGATTACCTTACAACAATGGTTAAGGATTTGGAAGTAGAACTCGAAACAAATAAGCAGAAAAGTAAAGAAAACCTTCAACAAGCTATTTTGATGGAGAGGGAAAAAGTTACCCAAATGCAGTGGGAAATGGAGGAACTTCGTCACAAATCATTGGAAATGGAGTTAAAATTGAAGTCTAAAGAGGGTGAAGATCCATTTTCAGTGCATACAAAAGAATTTACCCTCCAGGAGAAGGTTGATTTGCAAGAAGAGCTTGAATCCACGAAAGAGCAACTAAATAATGTTTTTAAGCGATTTGAAGAGATTGAAGGAAAATCAAAAGCAGACATCAGGGTTCTTGTTAAAGAGGTCAAATCTCTTCGAAGTACCCAAGCCAAACTTAAACAAGAGCTTAGTCAAACACTCCAACAGAAATCTGAGACTGAGGAGTTCCTTCAACAGGAAAGAGAAATGAGACAGCACGCTAACACCGCTTGGAGAAAGCTGCTGTCTGAATGTAGGAGCCTACATGATCGGCTTAAAGAATGCAGCATGAACTTTTCAGCAGATGAGGATTATAAACATGATGTGGAATCATCCGCCTTATCTAATGCCTTGGATTTGTTGACAACATCTGATGACCAACTCAATCTCCTGCTCACTGAGGAAAACCTTCTACTCGCTGGCAACCAAACCGCTACTTCAATGGCAGATGATGACGTTCAAGATCGCCACAATGGTTCGATTGAGATAGACACAGAGTTGAGGATGATACTTAAAGACATGTTCACAGAAAACGCTAGGTTGAGGAAACAGGTGAATTCATACTACCGGCATAGTATGCAATCGAAGATGTCAAAGGAAGCTGATGGTGCAGAGGCTTCTTCTTCAGAACATACTGAAGTAAATACCACTACAGAGACATGA 2229 42.75 MMQNRSPPKHRHDGTSPLPLGMDWSPPPRKWNGKNTVWPHDHHTGWSYCVIIPSWVALPKTRVADPVVGQFYRVQVGVQSPEGITAMRGVLRRFNDFLNLFSDVKKAFRKKTIPPAPSKGILRVKTRTLLEEVHNLQNVACMSLILLQRRRSLEEWLTKLLSDIDISRSAAVASFLELEAAARSFFQNDNQGPSDENPDYNSKICTHQSPPNSSSSTVAGGLSLASDYGSDTAYEASELGTASLGRDDNSEIAMDDLALDDDLSSPIEKLVKYGLSNIDEGLFMGQAIIEQLEGLPKHKSHPRYNSNLKDGHNGSTSKASYLNKNGLVPFADPEHGKVIGHARKLSDESVASDASSLRGGEISSFSPLGNGSLHHSGAEVSNAVEFLSNPELHFSHDALLFPKDHRHKLNRVLSTMLQRLVTAKTDMEDLISRLNQEIAVKDYLTTMVKDLEVELETNKQKSKENLQQAILMEREKVTQMQWEMEELRHKSLEMELKLKSKEGEDPFSVHTKEFTLQEKVDLQEELESTKEQLNNVFKRFEEIEGKSKADIRVLVKEVKSLRSTQAKLKQELSQTLQQKSETEEFLQQEREMRQHANTAWRKLLSECRSLHDRLKECSMNFSADEDYKHDVESSALSNALDLLTTSDDQLNLLLTEENLLLAGNQTATSMADDDVQDRHNGSIEIDTELRMILKDMFTENARLRKQVNSYYRHSMQSKMSKEADGAEASSSEHTEVNTTTET 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1961500 1968182 + CmaCh09G004490.1 Cma09g00449 300454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00449 742 SMART PX_2 56 179 IPR001683 GO:0035091
Cma09g00449 742 Gene3D - 68 188 IPR036871 GO:0035091
Cma09g00449 742 Coils Coil 484 504 - -
Cma09g00449 742 ProSiteProfiles PX domain profile. 50 183 IPR001683 GO:0035091
Cma09g00449 742 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 737 - -
Cma09g00449 742 SUPERFAMILY PX domain 41 179 IPR036871 GO:0035091
Cma09g00449 742 Coils Coil 512 546 - -
Cma09g00449 742 Coils Coil 417 437 - -
Cma09g00449 742 MobiDBLite consensus disorder prediction 715 742 - -
Cma09g00449 742 MobiDBLite consensus disorder prediction 1 26 - -
Cma09g00449 742 MobiDBLite consensus disorder prediction 187 220 - -
Cma09g00449 742 Coils Coil 551 589 - -
Cma09g00449 742 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 737 IPR044588 GO:0015031
Cma09g00449 742 Pfam PX domain 89 177 IPR001683 GO:0035091
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00449 - - - bhj:120085923 1229.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01508 Cma09g00449 CCT
Cma01g01508 Cma09g00449 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00616 Cma-Chr8:3458077 Cma09g00449 Cma-Chr9:1961500 3.99E-26 dispersed
Cma09g00449 Cma-Chr9:1961500 Cma17g00867 Cma-Chr17:6665348 5.63E-29 dispersed
Cma01g01508 Cma-Chr1:10588527 Cma09g00449 Cma-Chr9:1961500 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g498 . . . . . . . . . . Cma01g01508 . Car09g00394 . . . Cpe06g00330 . . . . . . . Cla05g01730 Cam05g1843 Cec05g1855 Cco05g1915 Clacu05g1831 Cmu05g1714 Cre05g1845 . Cone7ag1693 Cone17ag1014 Cone20ag0354 Lsi04g02120 Csa03g04325 Chy04g00375 . Blo17g00016 . . Bda13g01255 Bpe14g00585 . . Bma02g00020 Sed05g1708 Cmo01g01563 Cmo09g00456 Cma09g00449 . . . . Cpe02g00446 Bhi09g02227 Tan01g3629 Cmetu04g2606 . Hepe01g2012 Mch11g0548 . . . . . . . . . . . Cme04g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006027 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00449 Cma_Chr09 FPKM 14.734784 14.087815 15.714095 14.611059 9.645864 9.86841 10.080823 16.076185 15.410169 15.00851