Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00453 ATGTCATTGAAGGCGTCCAATTCCGAGAAGAACTTGATGTTGCCGGTGTCGGATCCTCCACACGGCAGTGAGGAGAAAGAGCGATTGATCAGAGGCGATGAGAAGCTCTTCAGAGGATCCGCCATGACCAAACGAGGAGCCTATGCTGCTCTCTCTTACATGGCTTGCGCAGTGCTATTGATTTTGTTCAACAAAGCAGCGCTTTCTTCTTATAATTTTCCAAGTGCAAACGTTGTTACACTTGTTCAGATGGTATGCTCATGTTGTTTTCTATATGCATTGAGACGTTGGAAAGTCATATCTTTTACAGTGGTTGATTCATTTTCTGATAATGCTGCTTCAATGGTTCCAATGAAGACATTGAGGCAAACCAGTCCTCTTGCTGGGACGTACTTGCTTTACATGCTAGCTACTATGGAGTCTGTTCGTGGAGTAAATGTTCCCATGTACACTACCCTCAGGCGAACCACAGTTGTTTTCACAATGGTTGTAGAGTATCTTCTGGCAGGACAAAAGTATACATATTCAGTTATTGGAAGTGTTGGTTTGATAGTTCTTGGTGCATTTATTGCTGGAGCTCGCGACTTGTCCTTTGACGTATATGGCTATTCTATTGTTTTCTTGTCGAACATCACCACAGCAATCTACCTTGCAACTATTTCCCGCATTGGAAAATCAAGTGGTCTTAATAGCTTTGGCCTCATGTGGTGCAATGGAATATTATGCGCTCCAGCTCTACTTTTCTGGACATTTATACGGGGCGACTTGGAGGCAACTATTAGCTTTCCTCATCTTTTTTCACCTGGATTTCTAATGGTGATGCTTGGTTCATGCACACTGGCTTTCTTCTTGAACTATAGTATATTTCTAAACACCACTCTAAATTCAGCAGTGACACAAACTATATGCGGTAATCTGAAGGATTTCTTTACCATTGGACTTGGGTGGATGATATTTGGCGGCCTTCCTTTTGACCTGCTAAATGTTATTGGGCAACTTCTGGGTTTTGTTGGCTCTGGTTTTCTGACGGATTTTGCAAACTCTGACGCTTCCGACTTTCCGCCGCCCATGACGACGGTCGAGAAGAATCGGAGATCGCCCTCGCTGCTTTCGTCTCCTTTGATGATTGTTGGTCTCTCGAAGAAGAATGTTTTGTATCGCCAGCTTCCACATCAGCCTCTCATGCTCTCCGTCCTTAAATTGGATGGCTCTTGTTTCGATATTCAAGTTAAGAGATCAGCCACTGTTGCTGAATTAAAGGGGGCAGTGGAGTCGGTCTTCAGTCACATGCCACAGAATGGACCAGGAAAGATTTCATGGCTCCATGTGTGGTGGTATTTCTGCTTATGCTATGCTGGTCAGAAGTTAGTTGATGATACAGACTACATTGCAAATTTTGGCATCAAGGATGGTGATCAGCTTCAATTCGTCCGGCATGTCACAACTGGCTACAATGTTATGAGAAAGCAATCAAAGAAATGGGTGGTTTCCTCAAAACTGCTCAGTCGGATATCATCTCGGTCAAAAAGCTACAAGCAAAATAATAAGGAAGATATGGAAAGAAGATACTACAACGATGTAGAGAGTGGAAGGATTCAACATCATGGCAACAATGAGCCAAAGGTGGTACTCTTTTTGGGAGGGTGGTTCTCTCACACCAAGCAGGCATCTACAGGAAAGAGGAGCATCAATAGCCTGGCTCGTCCATCAGGTTCTCGGCCTAGCCTGGTGCGTGGTTTTAAGAATTTAATACAATTATGCCGTGAGAAACGACATTATGAGAAAGTGAATAAAAATAAGAGATCCATGAATAGGAGTCTGAGTAGAAGATTAGAAATGACTGATACACACACAAGACAACTAGATTGA 1869 43.23 MSLKASNSEKNLMLPVSDPPHGSEEKERLIRGDEKLFRGSAMTKRGAYAALSYMACAVLLILFNKAALSSYNFPSANVVTLVQMVCSCCFLYALRRWKVISFTVVDSFSDNAASMVPMKTLRQTSPLAGTYLLYMLATMESVRGVNVPMYTTLRRTTVVFTMVVEYLLAGQKYTYSVIGSVGLIVLGAFIAGARDLSFDVYGYSIVFLSNITTAIYLATISRIGKSSGLNSFGLMWCNGILCAPALLFWTFIRGDLEATISFPHLFSPGFLMVMLGSCTLAFFLNYSIFLNTTLNSAVTQTICGNLKDFFTIGLGWMIFGGLPFDLLNVIGQLLGFVGSGFLTDFANSDASDFPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNNKEDMERRYYNDVESGRIQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSMNRSLSRRLEMTDTHTRQLD 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1978031 1987010 - CmaCh09G004530.1 Cma09g00453 300458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00453 622 ProSiteProfiles Ubiquitin domain profile. 394 483 IPR000626 GO:0005515
Cma09g00453 622 PANTHER SOLUTE CARRIER FAMILY 35 14 342 - -
Cma09g00453 622 SUPERFAMILY Ubiquitin-like 390 484 IPR029071 -
Cma09g00453 622 MobiDBLite consensus disorder prediction 1 27 - -
Cma09g00453 622 MobiDBLite consensus disorder prediction 599 622 - -
Cma09g00453 622 CDD Ubl_SNRNP25 394 479 IPR040610 -
Cma09g00453 622 Pfam Ubiquitin-like domain 396 480 IPR040610 -
Cma09g00453 622 Pfam Triose-phosphate Transporter family 52 338 IPR004853 -
Cma09g00453 622 MobiDBLite consensus disorder prediction 597 622 - -
Cma09g00453 622 PANTHER BNAA08G30680D PROTEIN 14 342 - -
Cma09g00453 622 Gene3D - 390 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00453 K15281 SLC35D; solute carrier family 35 - csv:101208375 649.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00154 Cma-Chr1:680155 Cma09g00453 Cma-Chr9:1978031 1.61E-30 dispersed
Cma09g00080 Cma-Chr9:352548 Cma09g00453 Cma-Chr9:1978031 1.01E-16 dispersed
Cma09g00453 Cma-Chr9:1978031 Cma01g01394 Cma-Chr1:9873181 4.98E-14 dispersed
Cma02g00631 Cma-Chr2:3808910 Cma09g00453 Cma-Chr9:1978031 3.92E-14 transposed
Cma05g01275 Cma-Chr5:9729208 Cma09g00453 Cma-Chr9:1978031 9.04E-150 transposed
Cma12g00278 Cma-Chr12:1442757 Cma09g00453 Cma-Chr9:1978031 6.40E-31 transposed
Cma13g00078 Cma-Chr13:588063 Cma09g00453 Cma-Chr9:1978031 6.37E-11 transposed
Cma01g01506 Cma-Chr1:10578178 Cma09g00453 Cma-Chr9:1978031 7.22E-125 wgd
Cma10g00533 Cma-Chr10:2440916 Cma09g00453 Cma-Chr9:1978031 4.27E-07 wgd
Cma11g00530 Cma-Chr11:2547199 Cma09g00453 Cma-Chr9:1978031 3.09E-29 wgd
Cma12g01188 Cma-Chr12:9307269 Cma09g00453 Cma-Chr9:1978031 3.07E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g492 . . . . . . . . . . . . Car09g00398 . . . Cpe06g00335 . . . . . . . Cla05g01734 Cam05g1847 Cec05g1859 Cco05g1919 Clacu05g1835 Cmu05g1718 Cre05g1849 . . . Cone20ag0675 Lsi04g02123 Csa03g04330 Chy04g00371 . Blo17g00017 . . Bda13g01257 Bpe14g00583 . . Bma02g00021 Sed13g2020 . Cmo09g00461 Cma09g00453 . . . . . Bhi09g02233 Tan01g3637 Cmetu04g0377 . Hepe01g2016 Mch11g0552 . . . . . . . . . . . Cme04g00413
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001360 2 7 2 2 2 2 3 2 2 1 2 2 2 3 3 2 2 2 3 2 2 2 2 3 3 2 2 2 6 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00453 Cma_Chr09 FPKM 4.526063 6.101742 6.470813 6.330192 6.327124 5.77461 5.761956 4.042916 3.98615 4.887626