Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00454 ATGGCCTACGCTTTTTGCTTGGACCCAGCTGCGAGTATACTCCGACAAAGGGAATCGTTCCTATTTTATTTGAGCAAGACAGAAAGGAACTCAAGTACGAAAATTATTGAGGTGGAAGGAACTGATGAAGGGAATGTTTTAGTACCCCATTATCATAAGATCCTAATGGAGCTTCAACTTGAGCTAGCGCTTTGTGTATCAGATCCCACCAGAGGTTTCGACCTGAACAGGGCTGCGTGCGATGGAAAAGATGTGTTTGGTTCAGATCCGAGGAGCTGCCTGTGTGCAGAAAGTACAAGCCATGGTAGACACAAGCGTGGATATGAAGATGCTTTCTTTAAGAGCAAAGACTCGTTTAAAGAGCTGTCTTTGCTGCTGTGGAGCGGTCACCCAAACAAGGAAGACGATGACTGGAAGGACACCAACCAGAGAAGCTCTTGTGCTCTACACATAAATGCTGGAGAGGAGAACAAAGTTATGGGTTGGCCGCCCATTAAATCATGGAGGAAAAAGTACCTTCATGAACTGCAACAGGATGGCTTTGGTTCTGATCAGATACCAAATCACTATTGGATGGAAGAGGATGAAGATGAAGAAATTGTTTTTAACCCAAAATATGTGAAGGTGAAGATGGAAGGGGTGCCAATAGCAAGGAAGATTGATGTGGGGCTGTATAGCTCTTATCAGACGCTGAAAACTGCCTTGATCCCAATGTTTTCCGATTCTTGCTATCAAAAGTGTGGGAGCAGCAATGCCATCTTAACTCTCACCTATCAGAACAAAGAAGGAGATTGGCTGCTTGCAGGAGATCTTCCATGGCAATCCACCCATTTCCCACTGCAAAACACCGACTCCGATAACATCGCTCCGAATCTCTCACTTTCTTTATCTCCGCAGTCACTTTTTCCCTCTCTTCTTCCCTTCTCTCTCATCTCCTCGCATTTTCACCTCCCTTTTCTAGCTGTTTCATTGGAAAGCCTCCGTCAATTTGGCGGCCGTCGCGTTGATCTGAAGGATTTCGTTGCAGATCCACGATATTCAGCCTCCGGTGCTGGTAAGCGCGATGATTTTGGTGGTTTTCTCGTTCGGAATAGCGTTGTGTGGACTGTTTGCTGA 1116 45.79 MAYAFCLDPAASILRQRESFLFYLSKTERNSSTKIIEVEGTDEGNVLVPHYHKILMELQLELALCVSDPTRGFDLNRAACDGKDVFGSDPRSCLCAESTSHGRHKRGYEDAFFKSKDSFKELSLLLWSGHPNKEDDDWKDTNQRSSCALHINAGEENKVMGWPPIKSWRKKYLHELQQDGFGSDQIPNHYWMEEDEDEEIVFNPKYVKVKMEGVPIARKIDVGLYSSYQTLKTALIPMFSDSCYQKCGSSNAILTLTYQNKEGDWLLAGDLPWQSTHFPLQNTDSDNIAPNLSLSLSPQSLFPSLLPFSLISSHFHLPFLAVSLESLRQFGGRRVDLKDFVADPRYSASGAGKRDDFGGFLVRNSVVWTVC 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1989365 1994683 + CmaCh09G004540.1 Cma09g00454 300459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00454 371 Pfam AUX/IAA family 101 251 IPR033389 -
Cma09g00454 371 SUPERFAMILY CAD & PB1 domains 203 275 - -
Cma09g00454 371 Gene3D - 201 282 - -
Cma09g00454 371 ProSiteProfiles PB1 domain profile. 204 291 IPR000270 GO:0005515
Cma09g00454 371 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 56 275 - -
Cma09g00454 371 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 56 275 IPR003311 GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00454 K14484 IAA; auxin-responsive protein IAA - csv:101208132 375.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00378 Cma09g00454 CCT
Cma05g00378 Cma09g00454 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00454 Cma-Chr9:1989365 Cma07g00596 Cma-Chr7:2561158 2.21E-17 dispersed
Cma09g00454 Cma-Chr9:1989365 Cma09g00457 Cma-Chr9:2002213 1.13E-28 proximal
Cma01g01505 Cma-Chr1:10569618 Cma09g00454 Cma-Chr9:1989365 6.43E-97 wgd
Cma10g00534 Cma-Chr10:2448008 Cma09g00454 Cma-Chr9:1989365 2.77E-22 wgd
Cma11g00532 Cma-Chr11:2553831 Cma09g00454 Cma-Chr9:1989365 1.12E-24 wgd
Cma12g00343 Cma-Chr12:1740163 Cma09g00454 Cma-Chr9:1989365 8.58E-07 wgd
Cma05g00378 Cma-Chr5:1669573 Cma09g00454 Cma-Chr9:1989365 3.27E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g491 . Blo12g01074 . Bda03g00073 . Bpe02g00558 . . Cmo05g00379 . . Cma05g00378 Car09g00399 . . . Cpe06g00336 Bhi04g00943 . . . . . Lcy13g1796 . . . . . . . . . . . Lsi04g02124 Csa03g04331 Chy04g00369 Cme03g01608 . . . Bda13g01258 . Bpe04g00058 . . Sed13g2021 . Cmo09g00462 Cma09g00454 . . Car05g00321 Cpe11g00323 Cpe02g00449 Bhi09g02234 Tan01g3641 Cmetu04g2772 . Hepe01g2017 Mch11g0553 . Cla08g01340 Cam08g1802 Cec08g1381 Cco08g1509 Clacu08g1496 . Cre08g1283 Lsi08g01211 . Chy03g01113 Cme04g00412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011123 2 1 1 0 2 1 2 1 1 1 0 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35611 PF02309 AUX_IAA 2.10E-27 CL0072 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00454 Cma_Chr09 FPKM 4.780131 6.80842 6.706817 6.310574 6.31171 6.348628 5.490423 5.031896 7.492247 6.446424