Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00455 ATGGCGCCTAGTACGATCCGGAAGGCGATCGGGGCGGTGAAGGACCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATACGGCGCCGGACCTTGAGGTGGCGATCGTGAAGGCCACTAGCCATGACGATGATCCGGCCAGTGAGAAGTATATTAGGGAGATTTTGAGCCTGACATCGTATTCTCGTGGCTATGTGAATGCGTGTGTGGTGGCGATTTCGAAGCGTCTGGCCAAAACGAGGGACTGGATTGTGGCGCTCAAGGCACTCATACTTGTGCACAGGTTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCCACTAGAAGGGGTACGAGGCTGTTGAATATGTCTGACTTTAAGGATGAAGCTCATTCGAGCTCATGGGATCACTCAGCTTTTATTCGAACTTATGCATTTTACTTAGATCAACGACTGGAATTGGTGTTGTTTGAAAAGAAAGGTGGTAGTGCAAGGGGAAATTCCCGTGGGGATGATAGATTTGATGGAAGAGATGACTTTAGATCTCCGCCCCCGAGGCCGTATGAGAACGGTTATGGCGAGTATAGGGGCGAGAGAGAGAATGGAAACTATGGTGGGATGAGGAGGTCGAGATCTTTTGGTGACGTAGGAGAATCAATGGAGAGGGAGGGGCAGGGGCAGGGGCGTAACAAGGGGCCTGTGACCCCATTGAGGGAAATGCCAATTGAGAGAATTTTCGGAAAGATGGGACATTTGCAGAGATTGTTGGATAGATTCTTGTCGTGTCGACCGACGGGGTTGGCGAAGAGTAGTAGGATGATTTTGTATGCTTTGTATCCTCTAGTGAGGGAGAGTTTTCAGTTGTATGCAGATATTTGCGAGGTTTTGGCTGTTTTGCTTGACAAATTCTTTGATATGGAGTATTCTGACAGTATGAAGGCATTTGATGCATATGGTAGTGCAGCCAAGCAGATTGATGAGCTAATTGCATTCTATAATTGGTGTAAAGACACAGGAGTTGCTAGATCCTCTGAGTACCCAGAGGTGCAGAGAATTACCAGCAAGTTACTGGAGACATTGGAGGAATTTCTGAGGGAAAGAGGGAAGGCGCCAAAGAGCCCCGAGAGGGAGCCACCTCCGCCCGCTCCTCAAGAGGAAGAACCAGTGCCTGATATGAATGAAATAAAAGCTCTTCCTCCACCTGAAAATTATACTCCACCTCCACCCGAACCTGAGCCCCAGCCTGCTCCTAAACCTCAACCACAAGTCACGGAAGACTTGGTCAATCTTAGAGATGATGCAGTTAGTGCAGATGCTCAAGGTAACAAGCTAGCACTGGCTCTGTTTGCTGGCCCAGCAGCTAATGGCGCAAATGGATCCTGGGAAGCTTTCCCTTCTGATGGACAGCCAGAAGTAACCTCTGCCTGGCAGACCCCGGCTGCTGAACCTGGCAAAGCCGATTGGGAATTGGCGTTGGTTGAGACAGCCAGCAATTTATCGAGGCAGAAGGCAGCGCTTGGCGGTGGACTCGACCCATTGTTGCTAAATGGCATGTATGACCAAGGAATGGTCAGACAGCACACTAGCACTGCACAGCTGAGCAGTGGAAGCGCTAGCAGTGTAGCATTGCCCGGCCCTGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCTCCCGATGGAACCGTCCAGGCTTTGAATCAGGATCCTTTCGCTGCATCGTTAAGCATTCCACCACCTTCATACGTGCAAATGGTGGAGATGGAGAAGAAACAGCATTTGCTGGTGCAGGAACAGCAGTTATGGCAGCAGTACGCAAGAGATGGGATGCAGGGGCAGAGCAGTTTGAACAAAATGAGTAACCCCCCAGGTTACTACAACACGGCCGCTGGACCAATGGCTCCGATGCCGTACGGGATGCCTCCGATGAACGGCAGCGGGTATTACTACATTCCTCAATGA 1956 50.41 MAPSTIRKAIGAVKDQTSIGIAKVASNTAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVNACVVAISKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFIRTYAFYLDQRLELVLFEKKGGSARGNSRGDDRFDGRDDFRSPPPRPYENGYGEYRGERENGNYGGMRRSRSFGDVGESMEREGQGQGRNKGPVTPLREMPIERIFGKMGHLQRLLDRFLSCRPTGLAKSSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDSMKAFDAYGSAAKQIDELIAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFLRERGKAPKSPEREPPPPAPQEEEPVPDMNEIKALPPPENYTPPPPEPEPQPAPKPQPQVTEDLVNLRDDAVSADAQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSSGSASSVALPGPGNSKTPVLALPAPDGTVQALNQDPFAASLSIPPPSYVQMVEMEKKQHLLVQEQQLWQQYARDGMQGQSSLNKMSNPPGYYNTAAGPMAPMPYGMPPMNGSGYYYIPQ 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1994754 1996709 + CmaCh09G004550.1 Cma09g00455 300460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00455 651 PANTHER - 5 629 - -
Cma09g00455 651 SUPERFAMILY GAT-like domain 234 364 - -
Cma09g00455 651 MobiDBLite consensus disorder prediction 363 380 - -
Cma09g00455 651 SMART enth_2 30 160 IPR013809 -
Cma09g00455 651 MobiDBLite consensus disorder prediction 160 233 - -
Cma09g00455 651 Gene3D ANTH domain 227 371 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cma09g00455 651 Pfam ANTH domain 31 364 IPR011417 GO:0005543
Cma09g00455 651 MobiDBLite consensus disorder prediction 160 182 - -
Cma09g00455 651 MobiDBLite consensus disorder prediction 525 544 - -
Cma09g00455 651 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Cma09g00455 651 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Cma09g00455 651 Gene3D - 2 155 IPR008942 -
Cma09g00455 651 MobiDBLite consensus disorder prediction 363 420 - -
Cma09g00455 651 CDD ANTH_N_AP180_plant 32 152 - -
Cma09g00455 651 MobiDBLite consensus disorder prediction 398 418 - -
Cma09g00455 651 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 629 IPR045192 GO:0048268|GO:0072583
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00455 - - - csv:101207892 1076.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00455 Cma-Chr9:1994754 Cma11g01630 Cma-Chr11:10718598 6.11E-157 dispersed
Cma09g00455 Cma-Chr9:1994754 Cma09g00456 Cma-Chr9:1997480 1.14E-17 tandem
Cma11g00534 Cma-Chr11:2559212 Cma09g00455 Cma-Chr9:1994754 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00455 Cma_Chr09 FPKM 28.417177 31.603472 32.210609 34.036793 26.783062 27.650911 26.537703 30.668016 29.554665 29.943777