Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00461 | ATGGTGAGCAGAGTTATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCGTTGCTGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTAATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGCAGAAGCCAGCCATGGCCATGGGCACGGATCTTCTCCAATGACCCCAAAAGCACTCTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCTTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACACGAGCCACTTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGATCCCGTCCCCATTGCCATCGCCCGAATCGACGAGCCAGGAAGCCGATGGCCATCGGAACGGAATCGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAATTTCAAGCTAA | 594 | 52.36 | MVSRVMVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEADGHRNGIDEEDRIAMQMIEELLNWNCPLPSISS | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2028621 | 2030524 | + | CmaCh09G004610.1 | Cma09g00461 | 300466 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00461 | 197 | CDD | AP2 | 11 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00461 | 197 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 6 | 195 | - | - | |
Cma09g00461 | 197 | MobiDBLite | consensus disorder prediction | 64 | 91 | - | - | |
Cma09g00461 | 197 | Pfam | AP2 domain | 11 | 60 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00461 | 197 | PRINTS | Ethylene responsive element binding protein signature | 12 | 23 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00461 | 197 | PRINTS | Ethylene responsive element binding protein signature | 34 | 50 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00461 | 197 | MobiDBLite | consensus disorder prediction | 148 | 168 | - | - | |
Cma09g00461 | 197 | SMART | rav1_2 | 11 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00461 | 197 | SUPERFAMILY | DNA-binding domain | 11 | 70 | IPR016177 | GO:0003677 | |
Cma09g00461 | 197 | Gene3D | AP2/ERF domain | 10 | 70 | IPR036955 | GO:0003700|GO:0006355 | |
Cma09g00461 | 197 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 | 6 | 195 | - | - | |
Cma09g00461 | 197 | ProSiteProfiles | AP2/ERF domain profile. | 11 | 68 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01479 | Cma09g00461 | CCT | |
Cma01g01479 | Cma09g00461 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01293 | Cma-Chr5:9852901 | Cma09g00461 | Cma-Chr9:2028621 | 9.11E-74 | dispersed | |
Cma09g00461 | Cma-Chr9:2028621 | Cma05g00358 | Cma-Chr5:1604135 | 3.72E-29 | dispersed | |
Cma01g01502 | Cma-Chr1:10548202 | Cma09g00461 | Cma-Chr9:2028621 | 6.39E-124 | wgd | |
Cma11g00547 | Cma-Chr11:2624261 | Cma09g00461 | Cma-Chr9:2028621 | 7.83E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35612 | PF00847 | AP2 | 4.10E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00461 | - | - | cmax:111476664 | 398.667 |