Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00461 ATGGTGAGCAGAGTTATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCGTTGCTGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTAATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGCAGAAGCCAGCCATGGCCATGGGCACGGATCTTCTCCAATGACCCCAAAAGCACTCTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCTTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACACGAGCCACTTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGATCCCGTCCCCATTGCCATCGCCCGAATCGACGAGCCAGGAAGCCGATGGCCATCGGAACGGAATCGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAATTTCAAGCTAA 594 52.36 MVSRVMVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEADGHRNGIDEEDRIAMQMIEELLNWNCPLPSISS 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2028621 2030524 + CmaCh09G004610.1 Cma09g00461 300466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00461 197 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Cma09g00461 197 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 195 - -
Cma09g00461 197 MobiDBLite consensus disorder prediction 64 91 - -
Cma09g00461 197 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Cma09g00461 197 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Cma09g00461 197 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Cma09g00461 197 MobiDBLite consensus disorder prediction 148 168 - -
Cma09g00461 197 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Cma09g00461 197 SUPERFAMILY DNA-binding domain 11 70 IPR016177 GO:0003677
Cma09g00461 197 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Cma09g00461 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 6 195 - -
Cma09g00461 197 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01479 Cma09g00461 CCT
Cma01g01479 Cma09g00461 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01293 Cma-Chr5:9852901 Cma09g00461 Cma-Chr9:2028621 9.11E-74 dispersed
Cma09g00461 Cma-Chr9:2028621 Cma05g00358 Cma-Chr5:1604135 3.72E-29 dispersed
Cma01g01502 Cma-Chr1:10548202 Cma09g00461 Cma-Chr9:2028621 6.39E-124 wgd
Cma11g00547 Cma-Chr11:2624261 Cma09g00461 Cma-Chr9:2028621 7.83E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35612 PF00847 AP2 4.10E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00461 - - cmax:111476664 398.667