Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00468 ATGGAAGCAAATGCGGGCCTGGTAGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCCCTGAAGAATATGAACAGCCAAACATGTCAAATATGTTGTGACACAGTTGGTCTTACGGCCTCTGGTGACGTCTTTGTTGCTTGCAATGAATGTGCATTTCCCGTTTGTCGCCCGTGTTACGAGTATGAGAGAAAAGACGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGCGTCGATGGTGATGATGATGAAGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAAACGAAACGACAGTGGCATGGGGAAGATGCTGAACTATCTACCTCTGCGAGACATGAATCTCAGCAGCCTATACCACTTCTTACCAATGGCCAATCAGTTTCAGGCGAAATTCCTTGTGCTACCCCTGACAATCAATCGGTGCGAACCACATCTGGTCCTCTGGGTCCTCCAGAAAAGCATATGCACTCACATCCATATGTTGACCCACGGCAACCAGTTCCTGTGAGAATTGTAGACCCATCAAAGGATCTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAATTGAAACAAGACAAAAACATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGACGATGCTAGACAACCTCTGAGTCGTGTCGTTCCTATTCCATCTTCTCACTTGACCCCGTATCGTGTTGTGATCATACTCCGACTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACTCACCCTGTGAAGGATGCATACCCATTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGCGAGACCTACCTTGAGAGACTTGCGTTAAGATACGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATGTCTTTGTTAGTACAGTGGATCCACTCAAAGAGCCTCCACTTATCACAGCAAACACTGTGCTTTCCATACTTTCTGTGGACTACCCAGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTTGAATCCCTCTCTGAAACGGCAGAATTTGCAAGGAAGTGGGTGCCCTTTTGCAAGAAGTTCAATATTGAGCCAAGGGCCCCTGAATTTTATTTTGCCCAAAAAATTGACTATTTAAAAGACAAGATTCAACCTTCCTTTGTCAAAGAGCGACGATCAATGAAAAGAGAGTATGAAGAATTCAAGGTTCGGATCAATGCGCTTGTTGCCAAAGCACAGAAGATGCCTGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAAAAACGACCAGGCTTCCAGCACCACAAGAAAGCAGGAGCCATGAATGCACTGATCCGAGTTTCTGCTGTGCTTACTAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAGGCTCTCAAGGAAGCCATGTGTTTCATGATGGATCCTGCATATGGGAAGAAAACATGTTATGTACAATTCCCACAACGTTTCGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTCGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGAACGGGTTGTTGTTTCAATCGACAAGCTTTATATGGTTATGATCCGGTTCTGACCGAGGCAGATTTGGAACCAAATATTATCATAAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATAGACAAAAAGAGAGCTGCAAAGAGGACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATCGAGGAAGGCGTTGAAGGTTATGATGATGACAGGTCGCTCCTGATGTCCCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAAATGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTCATCAGTTGTGGGTATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGTGGGTGGATATCGATTTACTGCATGCCTCCACGCCCGGCGTTCAAGGGATCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTTCGATGGGCATTGGGTTCCATAGAAATCTTGCTCAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTAAAGCTTTTGGAGAGAATAGCATACATCAATACCATCGTTTACCCTATCACCTCAATTCCACTGATTGCATACTGTATGCTTCCTGCGTTTTGTCTTTTGACTGGAAAGTTCATCATTCCTGAGATTAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACGGGTATTCTCGAACTCAGATGGAGTGGGGTTAGCATCGAAGACTGGTGGAGGAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACGAACTTCACTGTGACGTCAAAGGCCAACGATGAAGATGGAGATTTTGCGGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCTACCACTGTCCTTATTATGAATATGGTTGGTATAGTGGCAGGTGTTTCATATGCCATTAACAGTGGTTACCAGTCTTGGGGTCCTCTCTTTGGCAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTAGGAAGGCAAAACCGTACACCTACCATTGTCATTGTCTGGTCCATTCTCCTCGCTTCCATTTTCTCCTTGCTCTGGGTGCGGATCGATCCATTCACCTCGGCTGCGACCAAGGCTGCCAATGGTCAATGTGGTGTCAATTGCTAG 3249 45.06 MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNMNSQTCQICCDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKTKRQWHGEDAELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETYLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILSVDYPVDKVSCYVSDDGSAMLTFESLSETAEFARKWVPFCKKFNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRSMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDDRSLLMSQKSLEKRFGQSPVFIAATFMEMGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSAATKAANGQCGVNC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2053465 2059978 - CmaCh09G004680.1 Cma09g00468 300473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00468 1082 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cma09g00468 1082 Pfam Cellulose synthase 358 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma09g00468 1082 SUPERFAMILY RING/U-box 22 111 - -
Cma09g00468 1082 MobiDBLite consensus disorder prediction 161 193 - -
Cma09g00468 1082 PANTHER CELLULOSE SYNTHASE 19 1082 - -
Cma09g00468 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 650 IPR029044 -
Cma09g00468 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 1082 - -
Cma09g00468 1082 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Cma09g00468 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
Cma09g00468 1082 MobiDBLite consensus disorder prediction 74 144 - -
Cma09g00468 1082 Coils Coil 456 476 - -
Cma09g00468 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cma09g00468 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01497 Cma09g00468 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01319 Cma-Chr7:7466028 Cma09g00468 Cma-Chr9:2053465 0 dispersed
Cma08g00528 Cma-Chr8:3045951 Cma09g00468 Cma-Chr9:2053465 0 dispersed
Cma09g00468 Cma-Chr9:2053465 Cma10g00457 Cma-Chr10:2078387 0 dispersed
Cma01g01497 Cma-Chr1:10519143 Cma09g00468 Cma-Chr9:2053465 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00468 K10999 - csv:101205724 2188.69