Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00470 ATGGCTCTTTCAGCGCCGGTGAAGGCACCGGAAGCACTTCTAGGTTCGTCGTCGATTTCTGGCAGGGTTAGCTTCTTCTTTCGCCGGCAGTTTCCATCCAACCTTAGTCTACTGCGTCTTCCTCCGGTTCGTCACACTCTATCGATTACATTTGCTCGCCGTCGGAACCAGAATTCATCAGTCGGTCCGTCTTCATCGTCTTCGAAAAAAAAGAAGAGAAATTCGTTTCCGAAAAAAACTAGGGATGAGGCGGATGAAGAAGAGGATGCTCTTGAGTTGTTGTTTAGTCAACTGGAAGAAGATCTAAAAAATGATAAGCTTACCCTGGATGATGATGATGATGATGGCGAAGAGGATGAACTTAGCGAAGAGGACCTTGCCAAACTAGAGCGCGAGTTAGGGTTAGCACTTGGCATCGATGTTGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCTCGTGGATACCGAAGAAGAGGAAATGCCTGTGAAACTTAAGAACTGGCAACTTCGACGACTAGCCATGGCTTTGAAGAAAGGTCGCCGTAAAACTAGCATCAAGAGTCTTGCTGCTGAGCTTTGTCTTGATCGGGCTGTTGTTCTTGACTTGCTTCGCGAACCACCGCCACGTCTTCTGATGTTGAGTGCTTCTCTACCAGATCCGCCCACACCATCAAATCCAGAAACTAGAACATTACAAGCTACTCGTGAAGAAGAAGAAGAAGAACCCGTAGAAGTAGATACTGCAGAAGAGGCGGAAGAGGTGAAGGTGCCTGTTCATGTCATGCAACAGAGCTGGGCTGCTCAAAAGAGGCTGAAAAAGGTTCAGGTTGGAACTCTCGAGAGAGTGTATAGAAGAACAAAGCGGCCCACCAACGCAATGATTAGTAGCATTGTCCAAGTGACAAATCTGCCTCGCAAAAGAATAGTGAAATGGTTTGAAGATAAGCGAGGTGAAGACGGGGTTCCTGATCAACGCCTGCCTTATGATCGATCTGCTCCTCAATCTGCCTGA 1026 46.88 MALSAPVKAPEALLGSSSISGRVSFFFRRQFPSNLSLLRLPPVRHTLSITFARRRNQNSSVGPSSSSSKKKKRNSFPKKTRDEADEEEDALELLFSQLEEDLKNDKLTLDDDDDDGEEDELSEEDLAKLERELGLALGIDVDEEEEEEEEEEEEEDLVDTEEEEMPVKLKNWQLRRLAMALKKGRRKTSIKSLAAELCLDRAVVLDLLREPPPRLLMLSASLPDPPTPSNPETRTLQATREEEEEEPVEVDTAEEAEEVKVPVHVMQQSWAAQKRLKKVQVGTLERVYRRTKRPTNAMISSIVQVTNLPRKRIVKWFEDKRGEDGVPDQRLPYDRSAPQSA 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2077178 2080044 - CmaCh09G004700.1 Cma09g00470 300475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00470 341 Coils Coil 81 101 - -
Cma09g00470 341 MobiDBLite consensus disorder prediction 319 341 - -
Cma09g00470 341 MobiDBLite consensus disorder prediction 104 164 - -
Cma09g00470 341 MobiDBLite consensus disorder prediction 139 162 - -
Cma09g00470 341 MobiDBLite consensus disorder prediction 219 253 - -
Cma09g00470 341 SUPERFAMILY Homeodomain-like 271 326 IPR009057 -
Cma09g00470 341 Gene3D - 269 324 - -
Cma09g00470 341 ProSiteProfiles 'Homeobox' domain profile. 267 321 IPR001356 GO:0003677
Cma09g00470 341 CDD homeodomain 273 321 IPR001356 GO:0003677
Cma09g00470 341 SMART HOX_1 273 331 IPR001356 GO:0003677
Cma09g00470 341 MobiDBLite consensus disorder prediction 54 70 - -
Cma09g00470 341 Coils Coil 141 164 - -
Cma09g00470 341 Pfam Homeodomain 275 321 IPR001356 GO:0003677
Cma09g00470 341 MobiDBLite consensus disorder prediction 106 125 - -
Cma09g00470 341 MobiDBLite consensus disorder prediction 54 88 - -
Cma09g00470 341 PANTHER HOMEOBOX PROTEIN 8 35 336 - -
Cma09g00470 341 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 35 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00470 - - - cpep:111796839 468.003
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g456 Blo01g01378 . Bda01g00735 . . Bpe02g00571 . . . . . . Car09g00413 . . . Cpe06g00349 . . . . . . . Cla05g01751 Cam05g1864 Cec05g1876 Cco05g1940 Clacu05g1855 Cmu05g1736 Cre05g1868 Cone4ag1803 Cone7ag1711 . . Lsi04g02145 Csa03g04348 Chy04g00354 . . . . . . . . . . . Cmo09g00477 Cma09g00470 . . . . . Bhi09g02268 . . . . Mch11g0572 . . . . . . . . . . . Cme04g00393
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009857 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 3 1 1 0 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35613 PF00046 Homeodomain 8.60E-06 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00470 Cma_Chr09 FPKM 5.664079 4.83482 17.288403 14.431133 49.501438 47.376019 48.923264 17.553604 20.944036 18.930647