Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00474 | ATGGGATTATTAGGGAGATCGATATGCGGGAGAGAGGATCAGCGAGAGCTTGAGCACTTATCGAGAGACGACGGCAGCCAATACAGCCTCACGGGCGGAATCCTGCCGCCGCTTGGCGTGAATGGGCGAAATAATCGAAGAAGCAAACTCGGTCCTCATATAATCTCGCCGTTCAATTACAATTACAGATTTTGGGAGACGTTTCTGATATTTCTGGTACTCTACACAGCCTGGGCATGTCCTTTTGAGTTCGGGTTTCTCCCTACGCCCAGCGGAGTTCTGGCAATAATTGACAATATTGTAAATGGACTTTTCGCCATTGATATAGTTCTGACATTCTTCGTGGCGTATTTGGACAAAACTACTTACCTGCTGGTGGATGACCGGAAGCTGATTGCTCTACGGTATGCCAAAACCTGGTTGGTCCTCGACGTTGTGTCCAATATTCCGTCGGAGATGGCTCGCAATATTCTCCCTCCTACCCTTCAGGTTTATGGCTACTTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGCTCCATGTTCGCCAGGTTGGAAAAAGACAGAAACTACAACTATTTCTGGGTTAGATCTGCAAAGCTTATGTTTGTGTGTCTGTTCACAGTTCATTTTGCTGGTTGCTGCTTCTATCTAATTGATTCAAACTATAAGGACCCCAAAAGAACATGGTCGACCTTATACATGGAAGACTTCCATAATGAAAGTTTGTGGGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATCACCACCACTGGCTATGGCGATTTGCATCCAATCAATGATCAAGAGATGTCATTTGTCATCTGTTATCTGTTCTTCATCCTGGGGTTGCAATCTTACCTGATAGGAAATATGACAAACTTGGTCGTCCATGGCACCAGTCGAACCAGGCAATTTAGAGACACCATTCAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTGCCTGGTCGGCTGCAAGAACAGATGCTAGCTCATATGTGTTTGAAATTCAGGATTGATTCAGAGGGTTTACAACAGCAAGAGACAATTGATTCTCTTCCAAAAGCCATCAGATCCGGCATCGCACACCATCTCTTCTATTCACTCGTTGATAGTGCTTATTTGTTTAGTGGGGTGTCAACCGACTTGATCTTTCAACTGGTGACAGAAATGAAGGCTGAGTACTTTCCTCCCAAAGAAGACATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTTGTCACTGGCACTGCGGATCTTATTGTACAAAGAAATGGAATAGAAGAGATCGTCGGAGAAGCAAAGACAGGAGATGTCATTGGTGAGATTGGCGTGCTTTGTTATCAACCACAACTGTTTACAGTTCGAACCAGCCGTTTGAGTCAACTGTTGCGATTGAATCGCTCTTCGTTTTTCAACTTAGTACAAGCTAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGGTAAAAGACCCAATGATGGAGGAAATTCTGCAAGAAACAGAACAGTCCTTGATTCGTGCTGGAATGGAAATGCCTCTCAATTTATACTTTGCGGCAAGCAGTGGCGATGACTTATTGTTGCATCAGTTGCTAAAGCGTGGTTCAAACCCAAATGAAGTAGATGAGGGTAGCGGGAAGACAGCACTTCATATTGCAGCTGCTAAAGGAAACGAACACTGCGTAGTTCTACTCCTAGAGTATGGAGCAGATCCGAACCGAAGAGACTTTGAAGGAAGCCTACCCTTGTGGCAAGCAATACAAAGAAATCATGAGCCTATAGTCAAGCTCCTAATAGACAACGGTGCCGATATTTCTTCAGGAGACGTCGCCCAGTTTGCATGCACCGCTGCGGAGCAAAACAACATAGATATGCTCAAATCCATCATCGAATGTGGTGGAGATGTAACTCTGCCTAGAAGCAACGGGACTACAGCTCTTCACATGGCAGTATGTGAAGGAAACAGTGAAACGGTTAAGTTCCTTTTAGAGCATGGGGCTGACATTGATAAGCCAGATGTTCATGGATGGACTCCACGAGCGTTAGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTCTTAAGCAAGCTGTGAATAAATCATCTGTTGTCCATATTCCACAAAATCCCGAATCAAATTATATAAGGAAGTTCCAGAGCGAGTCGATCATACCGCGGTTTTCCCATGACTCCTGCATGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGAGAAGGAGCAATAATTATCGAAACTCGCTCGTTGGGTTCATGGAAAATACCAATAAGGGTGAAAGGGACGTTCTACAATCTGCATTGCTCGGTTTTAGCAATAGCCGAAGCATGAGATCGGCTTACCAGGCGAGAGTTGTTCTCAGTTGCCCTGAGAAAGGACAAGTTATTGGAAAGCTTATGCTTTTACCCAAAACCATCCAAGAACTAGTTGAAACTGGTTCCAAAAAATTTGGGATTTCTGCAACAATGATTTTAACTCATGAAGGAGCTGAAGTTGAGGATATAGACCTTGTCAGAGACGGTGATCACCTCATTCTTGTCAGTGATGCAAGTGCCGCCGTCCCGAGTGGCCAAGTACGGTAG | 2661 | 44.38 | MGLLGRSICGREDQRELEHLSRDDGSQYSLTGGILPPLGVNGRNNRRSKLGPHIISPFNYNYRFWETFLIFLVLYTAWACPFEFGFLPTPSGVLAIIDNIVNGLFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLVLDVVSNIPSEMARNILPPTLQVYGYFNMLRLWRLRRVSSMFARLEKDRNYNYFWVRSAKLMFVCLFTVHFAGCCFYLIDSNYKDPKRTWSTLYMEDFHNESLWVRYVTSIYWSIVTITTTGYGDLHPINDQEMSFVICYLFFILGLQSYLIGNMTNLVVHGTSRTRQFRDTIQAASNFAQRNQLPGRLQEQMLAHMCLKFRIDSEGLQQQETIDSLPKAIRSGIAHHLFYSLVDSAYLFSGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIVVTGTADLIVQRNGIEEIVGEAKTGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEVKDPMMEEILQETEQSLIRAGMEMPLNLYFAASSGDDLLLHQLLKRGSNPNEVDEGSGKTALHIAAAKGNEHCVVLLLEYGADPNRRDFEGSLPLWQAIQRNHEPIVKLLIDNGADISSGDVAQFACTAAEQNNIDMLKSIIECGGDVTLPRSNGTTALHMAVCEGNSETVKFLLEHGADIDKPDVHGWTPRALADHQGHEEIKELFSLKQAVNKSSVVHIPQNPESNYIRKFQSESIIPRFSHDSCMTPVRESNCSDMPPRRRRSNNYRNSLVGFMENTNKGERDVLQSALLGFSNSRSMRSAYQARVVLSCPEKGQVIGKLMLLPKTIQELVETGSKKFGISATMILTHEGAEVEDIDLVRDGDHLILVSDASAAVPSGQVR | 886 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2084472 | 2089767 | + | CmaCh09G004740.1 | Cma09g00474 | 300479 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00474 | 886 | SMART | cnmp_10 | 380 | 497 | IPR000595 | - | |
Cma09g00474 | 886 | PANTHER | POTASSIUM CHANNEL AKT1 | 9 | 877 | IPR045319 | GO:0005249|GO:0006813 | |
Cma09g00474 | 886 | Pfam | KHA, dimerisation domain of potassium ion channel | 810 | 872 | IPR021789 | - | |
Cma09g00474 | 886 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma09g00474 | 886 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma09g00474 | 886 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma09g00474 | 886 | PRINTS | EAG/ELK/ERG potassium channel family signature | 248 | 265 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma09g00474 | 886 | PRINTS | EAG/ELK/ERG potassium channel family signature | 292 | 301 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma09g00474 | 886 | PRINTS | Ankyrin repeat signature | 560 | 575 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | PRINTS | Ankyrin repeat signature | 608 | 622 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | Pfam | Ankyrin repeats (3 copies) | 530 | 621 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | Pfam | Ankyrin repeats (3 copies) | 631 | 705 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | Pfam | Ion transport protein | 63 | 307 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Cma09g00474 | 886 | Gene3D | Jelly Rolls | 348 | 518 | IPR014710 | - | |
Cma09g00474 | 886 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 482 | IPR000595 | - | |
Cma09g00474 | 886 | SUPERFAMILY | Ankyrin repeat | 530 | 709 | IPR036770 | - | |
Cma09g00474 | 886 | ProSiteProfiles | Ankyrin repeat profile. | 559 | 591 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | ProSiteProfiles | Ankyrin repeat region circular profile. | 559 | 590 | - | - | |
Cma09g00474 | 886 | Gene3D | - | 527 | 711 | IPR036770 | - | |
Cma09g00474 | 886 | ProSiteProfiles | Ankyrin repeat profile. | 592 | 624 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | SMART | ANK_2a | 592 | 621 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | SMART | ANK_2a | 656 | 685 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | SMART | ANK_2a | 525 | 554 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | SMART | ANK_2a | 559 | 588 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | SMART | ANK_2a | 623 | 652 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 301 | - | - | |
Cma09g00474 | 886 | Pfam | Cyclic nucleotide-binding domain | 400 | 484 | IPR000595 | - | |
Cma09g00474 | 886 | Gene3D | - | 63 | 301 | - | - | |
Cma09g00474 | 886 | PANTHER | POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 | 9 | 877 | - | - | |
Cma09g00474 | 886 | SUPERFAMILY | cAMP-binding domain-like | 305 | 500 | IPR018490 | - | |
Cma09g00474 | 886 | ProSiteProfiles | Ankyrin repeat region circular profile. | 656 | 687 | - | - | |
Cma09g00474 | 886 | ProSiteProfiles | Ankyrin repeat region circular profile. | 592 | 623 | - | - | |
Cma09g00474 | 886 | ProSiteProfiles | KHA domain profile. | 810 | 886 | IPR021789 | - | |
Cma09g00474 | 886 | ProSiteProfiles | Ankyrin repeat profile. | 656 | 688 | IPR002110 | GO:0005515 | |
Cma09g00474 | 886 | CDD | CAP_ED | 380 | 483 | IPR000595 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00474 | Cma-Chr9:2084472 | Cma10g00578 | Cma-Chr10:2647001 | 0 | dispersed | |
Cma04g02967 | Cma-Chr4:19492107 | Cma09g00474 | Cma-Chr9:2084472 | 1.23E-11 | transposed | |
Cma11g00553 | Cma-Chr11:2667971 | Cma09g00474 | Cma-Chr9:2084472 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00474 | K21867 | - | csv:101217334 | 1365.52 |