Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00474 ATGGGATTATTAGGGAGATCGATATGCGGGAGAGAGGATCAGCGAGAGCTTGAGCACTTATCGAGAGACGACGGCAGCCAATACAGCCTCACGGGCGGAATCCTGCCGCCGCTTGGCGTGAATGGGCGAAATAATCGAAGAAGCAAACTCGGTCCTCATATAATCTCGCCGTTCAATTACAATTACAGATTTTGGGAGACGTTTCTGATATTTCTGGTACTCTACACAGCCTGGGCATGTCCTTTTGAGTTCGGGTTTCTCCCTACGCCCAGCGGAGTTCTGGCAATAATTGACAATATTGTAAATGGACTTTTCGCCATTGATATAGTTCTGACATTCTTCGTGGCGTATTTGGACAAAACTACTTACCTGCTGGTGGATGACCGGAAGCTGATTGCTCTACGGTATGCCAAAACCTGGTTGGTCCTCGACGTTGTGTCCAATATTCCGTCGGAGATGGCTCGCAATATTCTCCCTCCTACCCTTCAGGTTTATGGCTACTTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGCTCCATGTTCGCCAGGTTGGAAAAAGACAGAAACTACAACTATTTCTGGGTTAGATCTGCAAAGCTTATGTTTGTGTGTCTGTTCACAGTTCATTTTGCTGGTTGCTGCTTCTATCTAATTGATTCAAACTATAAGGACCCCAAAAGAACATGGTCGACCTTATACATGGAAGACTTCCATAATGAAAGTTTGTGGGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATCACCACCACTGGCTATGGCGATTTGCATCCAATCAATGATCAAGAGATGTCATTTGTCATCTGTTATCTGTTCTTCATCCTGGGGTTGCAATCTTACCTGATAGGAAATATGACAAACTTGGTCGTCCATGGCACCAGTCGAACCAGGCAATTTAGAGACACCATTCAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTGCCTGGTCGGCTGCAAGAACAGATGCTAGCTCATATGTGTTTGAAATTCAGGATTGATTCAGAGGGTTTACAACAGCAAGAGACAATTGATTCTCTTCCAAAAGCCATCAGATCCGGCATCGCACACCATCTCTTCTATTCACTCGTTGATAGTGCTTATTTGTTTAGTGGGGTGTCAACCGACTTGATCTTTCAACTGGTGACAGAAATGAAGGCTGAGTACTTTCCTCCCAAAGAAGACATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTTGTCACTGGCACTGCGGATCTTATTGTACAAAGAAATGGAATAGAAGAGATCGTCGGAGAAGCAAAGACAGGAGATGTCATTGGTGAGATTGGCGTGCTTTGTTATCAACCACAACTGTTTACAGTTCGAACCAGCCGTTTGAGTCAACTGTTGCGATTGAATCGCTCTTCGTTTTTCAACTTAGTACAAGCTAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGGTAAAAGACCCAATGATGGAGGAAATTCTGCAAGAAACAGAACAGTCCTTGATTCGTGCTGGAATGGAAATGCCTCTCAATTTATACTTTGCGGCAAGCAGTGGCGATGACTTATTGTTGCATCAGTTGCTAAAGCGTGGTTCAAACCCAAATGAAGTAGATGAGGGTAGCGGGAAGACAGCACTTCATATTGCAGCTGCTAAAGGAAACGAACACTGCGTAGTTCTACTCCTAGAGTATGGAGCAGATCCGAACCGAAGAGACTTTGAAGGAAGCCTACCCTTGTGGCAAGCAATACAAAGAAATCATGAGCCTATAGTCAAGCTCCTAATAGACAACGGTGCCGATATTTCTTCAGGAGACGTCGCCCAGTTTGCATGCACCGCTGCGGAGCAAAACAACATAGATATGCTCAAATCCATCATCGAATGTGGTGGAGATGTAACTCTGCCTAGAAGCAACGGGACTACAGCTCTTCACATGGCAGTATGTGAAGGAAACAGTGAAACGGTTAAGTTCCTTTTAGAGCATGGGGCTGACATTGATAAGCCAGATGTTCATGGATGGACTCCACGAGCGTTAGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTCTTAAGCAAGCTGTGAATAAATCATCTGTTGTCCATATTCCACAAAATCCCGAATCAAATTATATAAGGAAGTTCCAGAGCGAGTCGATCATACCGCGGTTTTCCCATGACTCCTGCATGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGAGAAGGAGCAATAATTATCGAAACTCGCTCGTTGGGTTCATGGAAAATACCAATAAGGGTGAAAGGGACGTTCTACAATCTGCATTGCTCGGTTTTAGCAATAGCCGAAGCATGAGATCGGCTTACCAGGCGAGAGTTGTTCTCAGTTGCCCTGAGAAAGGACAAGTTATTGGAAAGCTTATGCTTTTACCCAAAACCATCCAAGAACTAGTTGAAACTGGTTCCAAAAAATTTGGGATTTCTGCAACAATGATTTTAACTCATGAAGGAGCTGAAGTTGAGGATATAGACCTTGTCAGAGACGGTGATCACCTCATTCTTGTCAGTGATGCAAGTGCCGCCGTCCCGAGTGGCCAAGTACGGTAG 2661 44.38 MGLLGRSICGREDQRELEHLSRDDGSQYSLTGGILPPLGVNGRNNRRSKLGPHIISPFNYNYRFWETFLIFLVLYTAWACPFEFGFLPTPSGVLAIIDNIVNGLFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLVLDVVSNIPSEMARNILPPTLQVYGYFNMLRLWRLRRVSSMFARLEKDRNYNYFWVRSAKLMFVCLFTVHFAGCCFYLIDSNYKDPKRTWSTLYMEDFHNESLWVRYVTSIYWSIVTITTTGYGDLHPINDQEMSFVICYLFFILGLQSYLIGNMTNLVVHGTSRTRQFRDTIQAASNFAQRNQLPGRLQEQMLAHMCLKFRIDSEGLQQQETIDSLPKAIRSGIAHHLFYSLVDSAYLFSGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIVVTGTADLIVQRNGIEEIVGEAKTGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEVKDPMMEEILQETEQSLIRAGMEMPLNLYFAASSGDDLLLHQLLKRGSNPNEVDEGSGKTALHIAAAKGNEHCVVLLLEYGADPNRRDFEGSLPLWQAIQRNHEPIVKLLIDNGADISSGDVAQFACTAAEQNNIDMLKSIIECGGDVTLPRSNGTTALHMAVCEGNSETVKFLLEHGADIDKPDVHGWTPRALADHQGHEEIKELFSLKQAVNKSSVVHIPQNPESNYIRKFQSESIIPRFSHDSCMTPVRESNCSDMPPRRRRSNNYRNSLVGFMENTNKGERDVLQSALLGFSNSRSMRSAYQARVVLSCPEKGQVIGKLMLLPKTIQELVETGSKKFGISATMILTHEGAEVEDIDLVRDGDHLILVSDASAAVPSGQVR 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2084472 2089767 + CmaCh09G004740.1 Cma09g00474 300479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00474 886 SMART cnmp_10 380 497 IPR000595 -
Cma09g00474 886 PANTHER POTASSIUM CHANNEL AKT1 9 877 IPR045319 GO:0005249|GO:0006813
Cma09g00474 886 Pfam KHA, dimerisation domain of potassium ion channel 810 872 IPR021789 -
Cma09g00474 886 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00474 886 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00474 886 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00474 886 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00474 886 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00474 886 PRINTS Ankyrin repeat signature 560 575 IPR002110 GO:0005515
Cma09g00474 886 PRINTS Ankyrin repeat signature 608 622 IPR002110 GO:0005515
Cma09g00474 886 Pfam Ankyrin repeats (3 copies) 530 621 IPR002110 GO:0005515
Cma09g00474 886 Pfam Ankyrin repeats (3 copies) 631 705 IPR002110 GO:0005515
Cma09g00474 886 Pfam Ion transport protein 63 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma09g00474 886 Gene3D Jelly Rolls 348 518 IPR014710 -
Cma09g00474 886 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Cma09g00474 886 SUPERFAMILY Ankyrin repeat 530 709 IPR036770 -
Cma09g00474 886 ProSiteProfiles Ankyrin repeat profile. 559 591 IPR002110 GO:0005515
Cma09g00474 886 ProSiteProfiles Ankyrin repeat region circular profile. 559 590 - -
Cma09g00474 886 Gene3D - 527 711 IPR036770 -
Cma09g00474 886 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Cma09g00474 886 SMART ANK_2a 592 621 IPR002110 GO:0005515
Cma09g00474 886 SMART ANK_2a 656 685 IPR002110 GO:0005515
Cma09g00474 886 SMART ANK_2a 525 554 IPR002110 GO:0005515
Cma09g00474 886 SMART ANK_2a 559 588 IPR002110 GO:0005515
Cma09g00474 886 SMART ANK_2a 623 652 IPR002110 GO:0005515
Cma09g00474 886 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Cma09g00474 886 Pfam Cyclic nucleotide-binding domain 400 484 IPR000595 -
Cma09g00474 886 Gene3D - 63 301 - -
Cma09g00474 886 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 9 877 - -
Cma09g00474 886 SUPERFAMILY cAMP-binding domain-like 305 500 IPR018490 -
Cma09g00474 886 ProSiteProfiles Ankyrin repeat region circular profile. 656 687 - -
Cma09g00474 886 ProSiteProfiles Ankyrin repeat region circular profile. 592 623 - -
Cma09g00474 886 ProSiteProfiles KHA domain profile. 810 886 IPR021789 -
Cma09g00474 886 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Cma09g00474 886 CDD CAP_ED 380 483 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00474 Cma-Chr9:2084472 Cma10g00578 Cma-Chr10:2647001 0 dispersed
Cma04g02967 Cma-Chr4:19492107 Cma09g00474 Cma-Chr9:2084472 1.23E-11 transposed
Cma11g00553 Cma-Chr11:2667971 Cma09g00474 Cma-Chr9:2084472 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00474 K21867 - csv:101217334 1365.52